LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g0553	ATGGATTTCTTGCAAGCACCAGAAAATCAGATACTCGTGGGTGTGGCCGTGGCCGTTGTTGCCATTGGGATTGGTGCTGTCTATCTCTTTTCATCCAAGAAGCGCAAAGGTTCCTTGGACCCAGAGAACTTTAAGCCGTTCAAACTTGTTAAGCAGGCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCACTCCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGGGGTAAAGATGCTCAAGGTGAAGAGGTTGTCAAACCATATACCCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGATGTACCCACAAGGAAGGATGTCACACCACTTCCGCGAGATGCGTGTTGGTGACTTTCTTTCTGTGAAAGGACCCAAGGGACGTTTCAAGTACCAACCTGGCGAGGTTAGGGCATTTGGGATGCTTGCTGGAGGGTCTGGAATCACTCCAATGTTCCAAGTTGCTAGAGCTATATTAGAAAACCCTAATGACAGGACCAAGGTACATCTTATCTATGCCAATGTCACATATGAGGACATTCTTTTGAAGGAAGAACTTGATGGTCTTGCTTCTATCTATCCAGATCGATTCAAAGTATACTATGTGTTAAATCAGCCTCCTGAGGTATGGGATGGTGGTGAAGGATTTGTGTCCAAGGAGATGATTCAAACTCATTGCCCTGCTCCAGCACATGATATTAAGGTATTGAGATGTGGGCCACCACCTATGAACAAGGCCATGGCTGCTCACCTTGAAGCCCTTGAATATGCTCCTGAGATGCAGTTCCAGTTCTGA	837	0.4528	MDFLQAPENQILVGVAVAVVAIGIGAVYLFSSKKRKGSLDPENFKPFKLVKQAQLSHNVAKFTFALPTPTSVLGLPIGQHISCRGKDAQGEEVVKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDFLSVKGPKGRFKYQPGEVRAFGMLAGGSGITPMFQVARAILENPNDRTKVHLIYANVTYEDILLKEELDGLASIYPDRFKVYYVLNQPPEVWDGGEGFVSKEMIQTHCPAPAHDIKVLRCGPPPMNKAMAAHLEALEYAPEMQFQF	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g0553	278	Pfam	Oxidoreductase NAD-binding domain	155	261	IPR001433	GO:0016491
	Aed4g0553	278	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	192	203	IPR001709	GO:0016491
	Aed4g0553	278	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	248	256	IPR001709	GO:0016491
	Aed4g0553	278	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	154	173	IPR001709	GO:0016491
	Aed4g0553	278	CDD	cyt_b5_reduct_like	47	278	-	-
	Aed4g0553	278	Pfam	Oxidoreductase FAD-binding domain	47	145	IPR008333	-
	Aed4g0553	278	PANTHER	NADH-CYTOCHROME B5 REDUCTASE	2	278	-	-
	Aed4g0553	278	Gene3D	Translation factors	37	136	-	-
	Aed4g0553	278	Gene3D	-	137	278	IPR039261	-
	Aed4g0553	278	SUPERFAMILY	Riboflavin synthase domain-like	38	147	IPR017938	-
	Aed4g0553	278	PRINTS	Cytochrome B5 reductase signature	192	203	-	-
	Aed4g0553	278	PRINTS	Cytochrome B5 reductase signature	248	256	-	-
	Aed4g0553	278	PRINTS	Cytochrome B5 reductase signature	131	145	-	-
	Aed4g0553	278	PRINTS	Cytochrome B5 reductase signature	154	173	-	-
	Aed4g0553	278	PRINTS	Cytochrome B5 reductase signature	73	84	-	-
	Aed4g0553	278	PRINTS	Cytochrome B5 reductase signature	95	102	-	-
	Aed4g0553	278	ProSiteProfiles	Ferredoxin reductase-type FAD binding domain profile.	42	146	IPR017927	GO:0016491
	Aed4g0553	278	PANTHER	NADH-CYTOCHROME B5 REDUCTASE	2	278	IPR001834	GO:0016491
	Aed4g0553	278	SUPERFAMILY	Ferredoxin reductase-like, C-terminal NADP-linked domain	134	274	IPR039261	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g0553	Aed-Chr4	4599124	4604211	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed4g0553	2	278	NADPH P450 reductases	AT5G17770	82.374	1.24e-165	458

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g0553	K00326		-	gmx:100816447	533.102