Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0550 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAGGAAGATATCATCCTTGTATCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACTCCCCATGAGGAAGGAATGATAATCCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTATCTTCCACAAAGAACAGACAATGACATAAAGAATTATTGGAACACTCATCTAAAGAAGAAGCTGAAGAAATTTCAAGCAGCTTTGGATCCTCACTCAGCAATATCAGACTCAACAAGCGGTGGCCAGTTTCTACCAAAGAGCTTCAGTGACAGAAGAAGTTCTTTAGACATCATCAACAACAACCATGGCTCATCCACAACAACAACAACAACAACAACAACAACATATGCTTCAAGCACTGAGAACATCTCAAGACTCTTGGAAGGTTGGATGAGATCTTCTCCAAAGCCACTCAAGAGATCTCAGCAAGATGAAAGCATCAATGATGATGATGATGATGATGATAATAACAACAACAACTTTGAAAGCACTACTAATAAGCTAGTAGTGCCTCATCTTCAGCACAAGATGATTAGAAACAACAAAGATGAGCAAGAGGGTGGTGGTGCTGTTGTAGACATGGTTTCTCATGAAGAGTTTGATTCTATTTTGTCCTTTGAGAACCTAAACAATGCTACTGCTTGGGACAAGTCCACTTGTGATTCCATGCCAGAAAAGAGTACTTCTGAAGCTGCTGCTGCTGAATGTTCTCAACATCATCATCATCATCATGATATAGCTTCTGATCAAGAGAGGAACAACAACAACATTAGGCAAAAATCTGAGAACAGTGTTGGTGGTGCTCCTCCGTTGTCATTTCTTGAGAAGTGGCTCTTGGATGAAAACGTTGGTCATCAAGTGGAGGAGATGATGGAGTTGTCTCCTATGTTCCAATAG 1062 0.4209 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALDPHSAISDSTSGGQFLPKSFSDRRSSLDIINNNHGSSTTTTTTTTTTYASSTENISRLLEGWMRSSPKPLKRSQQDESINDDDDDDDNNNNNFESTTNKLVVPHLQHKMIRNNKDEQEGGGAVVDMVSHEEFDSILSFENLNNATAWDKSTCDSMPEKSTSEAAAAECSQHHHHHHDIASDQERNNNNIRQKSENSVGGAPPLSFLEKWLLDENVGHQVEEMMELSPMFQ 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0550 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aed4g0550 353 CDD SANT 69 112 IPR001005 -
Aed4g0550 353 MobiDBLite consensus disorder prediction 149 173 - -
Aed4g0550 353 MobiDBLite consensus disorder prediction 274 308 - -
Aed4g0550 353 CDD SANT 16 61 IPR001005 -
Aed4g0550 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 343 - -
Aed4g0550 353 Gene3D - 68 129 - -
Aed4g0550 353 Gene3D - 13 66 - -
Aed4g0550 353 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed4g0550 353 SMART sant 66 114 IPR001005 -
Aed4g0550 353 SMART sant 13 63 IPR001005 -
Aed4g0550 353 MobiDBLite consensus disorder prediction 290 306 - -
Aed4g0550 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed4g0550 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed4g0550 353 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aed4g0550 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed4g0550 353 PANTHER TRANSCRIPTION FACTOR MYB60 1 343 - -
Aed4g0550 353 MobiDBLite consensus disorder prediction 187 227 - -
Aed4g0550 353 MobiDBLite consensus disorder prediction 274 289 - -
Aed4g0550 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0550 Aed-Chr4 4566977 4568877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0550 1 137 MYB Transcription Factor Family AT5G62470 79.710 1.17e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g0550 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0550 K09422 - gmx:100817854 519.62