Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0545 ATGGGAAGCAGAAAGGAAGAAGAGAGGAACGAAAAAATCATCAGAGGTCTCATGAAGCTTCCTCCCAATCGAAGATGCATCAACTGTAATAGTATGGGTCCACAATATGTTTGTACCAATTTCTGGACCTTTGTTTGCATGACCTGCAGTGGAATACATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAGAATGGGGGTAACCAGCGTGCAAGGGAAATATATATGAAAAATTGGGACTTCCAGAGGCAGCGGTTGCCAGATAGCAGTAATGTTGATAAAATAAGAGAGTTTATTAGGAATGTATATGTGGATCGAAGATATGCTGCAGCAAAGTCTTCTGATAAGCCTCCAAGAGATGTGCAGAGTCCTAGAATTCATGAAGATGATACAAGGCGTGCCAGTTCCTATCACTCGTATTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGACGATATGGAAAACAAGCAGCTGCACTTACCAGGAAGCCTGGTTCAGATAAAGTTCGCTACGAAGGAAAGATAAGTAGTATTATCTTTAGTCCTGGTCGCTTCAGCGATCATGCATATGATGATAGATTTGCAAATGAGGGATCTGGTCCAAGAATCTCTGATTTTTCTATTTCTACTGGTGGTGAGCAATTTAAAACTGATGTTCAGCATTCTGGTACCTGTTCAAGTGAAGATGTATGGTCTCACGCAACAAATACGTCTCTGGAAACAAACTCCAAGAGAGACGCAGATGGAATTCATCGTCCACAGAGAACTACTTCATTGGGATCAACAGGCAGCAATCTGGCATCCTTAAGATCTTACAGTTCCGGTGGTTTAGTTGATTTTTTCTCAGAACCATTCCAAGCTTCTGGACCCCATCAAAATAAAGTGTCTTCTACTCCACAACCATCTGATCTGGGAAGTACTATTAGTTCAGATCTTTCTGAGGCACCAGTGGCACCCAAACCATTATCTTCATCTGCTTCATCTATTGACCTTTTCCAGTTACCAGCTGCACCGTCTCAGGCTTCATCAGTGGATCTGTTTCATTCGTCTGCTTTATCTGCAATTCCATCTTTCAATGAGCCTCAACCTGTGAACACATCCCAATCCTCATCTGTTGACTTCTTTATGGATCTTTCTCAGCAGCCATCTGCTGCAACCTCAAATGAGAAGTCACTGGAGTTGTCTGTCCCTAAAAATGAAGGATGGGCAACATTTGATACGCCTCTGCACACAACATCCACTGCACAAGTAGAAATTCCAACAGCAGTACCTTCAACTGCTGAATCCTTGCACGAAAAATTCGATCCATTTTCAAACTTAAATGCAAATATGCCATGGCCATGTTCTGAAACTTCTAGTACTAGTGTTCTTTCTTCAGTTACATCTAATTTATGGCATGATGGCACATGGAATGGAGAAGAACAAGTTTCTGTTACAGCATCAAACTCTCAACCATGGAGTGCATTTAAAGATTCTGCTAACTCTGTTCCTGTGGATGCCATTATTAATCAAGGATTACAAATGCATGATCTTCCATCAACTGATGATCAGTTTTTGGATTTAAGAGCTTCTGAGGGATCCAATAGAGGTGGTATGCAAGGCATAGCCCCTGTTGCTGGGTTTGATCATGATCTTTCATCGCATTTTGTTAGTGGCTCACCATGCCCCACATCTGCATTTCCTCCGATGGGAGAGGTTCAGCCTAATGAAATCAACCATAAATCAACTAATCCATTTGATTATCCTTATGATTCAGATATAGAACATAATAATACGTGCCAATTGCAATTCCTTGATGTCAGCTCTCTACAAGCTGCTCTACCAGATTCCCAGCTACTGCCCACCTTCCAAAGTGGTATTGCTGAACCATGGCTCCCTCAGACACTGAATCCTTATGTCTCCTCTGCAGGACAAGGTGGTTTGACATTCATGGCTGCACCGCCACCAAGTTCTCAAATACTGAATATCCAGACGAATGGACCCGTTGCTTCTGTTGGGGGCAATCCCTTTGCATAG 2061 0.4231 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSMGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYMKNWDFQRQRLPDSSNVDKIREFIRNVYVDRRYAAAKSSDKPPRDVQSPRIHEDDTRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVRYEGKISSIIFSPGRFSDHAYDDRFANEGSGPRISDFSISTGGEQFKTDVQHSGTCSSEDVWSHATNTSLETNSKRDADGIHRPQRTTSLGSTGSNLASLRSYSSGGLVDFFSEPFQASGPHQNKVSSTPQPSDLGSTISSDLSEAPVAPKPLSSSASSIDLFQLPAAPSQASSVDLFHSSALSAIPSFNEPQPVNTSQSSSVDFFMDLSQQPSAATSNEKSLELSVPKNEGWATFDTPLHTTSTAQVEIPTAVPSTAESLHEKFDPFSNLNANMPWPCSETSSTSVLSSVTSNLWHDGTWNGEEQVSVTASNSQPWSAFKDSANSVPVDAIINQGLQMHDLPSTDDQFLDLRASEGSNRGGMQGIAPVAGFDHDLSSHFVSGSPCPTSAFPPMGEVQPNEINHKSTNPFDYPYDSDIEHNNTCQLQFLDVSSLQAALPDSQLLPTFQSGIAEPWLPQTLNPYVSSAGQGGLTFMAAPPPSSQILNIQTNGPVASVGGNPFA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0545 686 MobiDBLite consensus disorder prediction 123 148 - -
Aed4g0545 686 PANTHER ARFGAP/RECO-RELATED 1 686 IPR044820 GO:0005096
Aed4g0545 686 MobiDBLite consensus disorder prediction 298 336 - -
Aed4g0545 686 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Aed4g0545 686 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Aed4g0545 686 MobiDBLite consensus disorder prediction 301 328 - -
Aed4g0545 686 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Aed4g0545 686 MobiDBLite consensus disorder prediction 253 280 - -
Aed4g0545 686 CDD ArfGap_AGFG 11 123 - -
Aed4g0545 686 Pfam Putative GTPase activating protein for Arf 12 124 IPR001164 GO:0005096
Aed4g0545 686 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 686 - -
Aed4g0545 686 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Aed4g0545 686 MobiDBLite consensus disorder prediction 123 160 - -
Aed4g0545 686 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Aed4g0545 686 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Aed4g0545 686 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0545 Aed-Chr4 4534711 4543370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0545 14 116 C2H2 Transcription Factor Family AT4G05330 34.211 4.62e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0545 K15044 - gmx:100817495 1186.02