Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0519 ATGGCACCACTTCTTTTTCGTCCTTTGCTTCGCAGCCGCGTCATGGCCTCTCATTTTTCGTCTTTCTTCCGCACGTCTCGTTTCGTTTTTCCACACGTCCCATTCTTCTGCCGCCGCTTCGCCATGCTCACAGATTGTAGCTCTGGCTCTGACTCTGACTCTGAACAAGTTCTGGTGAAGCCTTCCCGTGTTAATGATACGTTGTCTTTCTTCCCCACGCCCCTTTCTTCCCTTTTCTCTTCTTCCACGCTCTACAAAAGCGAAGGTTCCACCGATAGCTCTGACTATGATAAGTTCTCAGACCGGGCCGAGTTAGGAAAGGAGTCCAAGTCTATAGAAAAATACTGTGCATCTGAGATGAATGTAATTGCCAAATACCGTGGCTTACATGAAGCAGAGCTTTACATTGAGAAAGCTCCAGAATCTTGTAGCAGAGAGTTTTTGTACGAGACTTTATTGGCTAACTGTGTCCGCCAGAACAAGCTGAAGAAAGCAGAGAAAGTTTTTGGTAAAATGCAGGATTTTAAATTTCCTATTACACTGTTTACTTGCAATGAGTTACTATACCTGTACATGAGGAATGACTGCAAGGAGAAAATTGGTGAGGTGTTAGGGTTAATGACAAAGGAGAATATCAAACTTTCTTCTTTAACTTATTCAATCCTAATAGACGCACTGGGCCAGTCCAAAGATATTAACGGTATCAATCAAGCTGTTGATTTTATGAAGGCTCACGGCATTGAACCAGTCATCCACACACAGGCTGTTTTGGCTATGCATTACATCTCATGTGGGCTTCAAGACAAAGGTGAAACACTGTTGAAGGAGATGGGGGGAGCGGAAAACTTAAAACAGAATCGGTGGCTATGCCCAGTTTTGCTACATGTCTATGCAAACCTAGGAAGGGTGGATGAAGTGGGAAAAATTTGGGAGGTCTGTGAGACAAACCCTCGGTATAAGGAGTGTTTGGTGGCAATCGCAGCTTGGGGGAAGTTGGATGAAATCGAAGAGGCAGAGAAAGTCTTTGAGATGGTGCGCCAGGTAAAGAAATGGAAAAATTTTCCCGAGAGCTGGGAGGTAATGCTGAAGGTCTACAAAGATAATAATATGCTAATGGATCATGAGAAACTTCTGAGGCAAATGGGAGCCAGTGAGGTCTTCATAAACCCAGTGACCTTGGACAAAATAGTGAATCAGTATGTGGAAGCTGGGGAAGTAGAGAAAGCAGACTCTGTTCTTCGTAAGGTGACCAAACTTCATAAGATGGCCAAATGGAGCGTGAGGCCAATGTTTACATCCTACGGCGCTGTCTTGAAGCAATATGCCAGTAGAGGTGACATCCATAACACGGAGAAAATTCTCCGTGCAATAGAAGAACATGGATATTCAGTTGAAGTAAAAGTGCACCAAATATCTGAAGGATGCCTATACAAAGGCGGAGTCTATTATGTACCACGCGTGAGACGCTTTCTGAAGTTAGACTGGAAAAGGTTTTTCTCCTTTCCTGAACACAGGTACAAGTTAATTAAGGAAGTTGGTGATGGAACATTTGGGACTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTTCATTACGAAAAATGAATCATCCGGATATCGTGAAGCTGAAGGAAGAATACAATCTGTACCAACTTATTAAAAACAGGGAAAAGCTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCGGCGTGGATACTTTCATCGCGATCTGAAGCCTGGTACTTGTTTATCATCGTGCAATTGTGTTAGAGTATAA 1815 0.4292 MAPLLFRPLLRSRVMASHFSSFFRTSRFVFPHVPFFCRRFAMLTDCSSGSDSDSEQVLVKPSRVNDTLSFFPTPLSSLFSSSTLYKSEGSTDSSDYDKFSDRAELGKESKSIEKYCASEMNVIAKYRGLHEAELYIEKAPESCSREFLYETLLANCVRQNKLKKAEKVFGKMQDFKFPITLFTCNELLYLYMRNDCKEKIGEVLGLMTKENIKLSSLTYSILIDALGQSKDINGINQAVDFMKAHGIEPVIHTQAVLAMHYISCGLQDKGETLLKEMGGAENLKQNRWLCPVLLHVYANLGRVDEVGKIWEVCETNPRYKECLVAIAAWGKLDEIEEAEKVFEMVRQVKKWKNFPESWEVMLKVYKDNNMLMDHEKLLRQMGASEVFINPVTLDKIVNQYVEAGEVEKADSVLRKVTKLHKMAKWSVRPMFTSYGAVLKQYASRGDIHNTEKILRAIEEHGYSVEVKVHQISEGCLYKGGVYYVPRVRRFLKLDWKRFFSFPEHRYKLIKEVGDGTFGTVWRAINKQSGEVSLRKMNHPDIVKLKEEYNLYQLIKNREKLFSENEVRNWCFQVFQGLAYMHRRGYFHRDLKPGTCLSSCNCVRV 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0519 604 Pfam Pentatricopeptide repeat domain 181 228 IPR002885 -
Aed4g0519 604 ProSiteProfiles Protein kinase domain profile. 506 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0519 604 PANTHER OS01G0280400 PROTEIN 103 470 - -
Aed4g0519 604 SUPERFAMILY Protein kinase-like (PK-like) 491 600 IPR011009 -
Aed4g0519 604 Pfam Protein kinase domain 549 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0519 604 Gene3D Phosphorylase Kinase; domain 1 497 545 - -
Aed4g0519 604 Pfam PPR repeat 149 175 IPR002885 -
Aed4g0519 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Aed4g0519 604 SMART serkin_6 506 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0519 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Aed4g0519 604 Gene3D Tetratricopeptide repeat domain 144 321 IPR011990 GO:0005515
Aed4g0519 604 Gene3D Tetratricopeptide repeat domain 322 481 IPR011990 GO:0005515
Aed4g0519 604 PANTHER OS12G0527900 PROTEIN 103 470 - -
Aed4g0519 604 Gene3D Transferase(Phosphotransferase) domain 1 546 603 - -
Aed4g0519 604 TIGRFAM PPR: pentatricopeptide repeat domain 148 179 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0519 Aed-Chr4 4056674 4059728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0519 96 461 EF-hand Containing Proteins AT1G02150 24.202 7.58e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Aed4g0519 Pkinase 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0519 - - gmx:100500196 431.795