Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0517 ATGTCCCTTGAAGAGTCGCTAAGATCTCTTTCGCTGGATTACCTCAACCTCCTTATCAACGGGCAGGCGTTCAGCGACGTCACTTTCAGTGTGGAGGGCCGCCTTGTCCACGCGCACCGCTGCATACTCGCGGCCAGGAGCCTCTTCTTCAGGAAATTCTTCTGTGGGCCGGACCCTCCGTCTGGACTCGACCCCACAGGGTCGCGAGGAGGAGTTAACAGCAGCAACTCCTCCTCGCGGTCCGGGGTCATCCCCGTCAACTCTGTGGGATACGAGGTTTTTCTTCTCATGCTCCAGTTTCTCTACAGTGGGCAGGTCTCCATCGTCCCTCAGAAGCACGAGGCCAGGCCTAATTGCGGCGAGCGCGGCTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCACTCGACACCCTCGCCGCCGCTAGATACTTCGGCGTCGAACAGCTCGCATTGCTCACTCAGAAACAACTGGCGAGCATGGTAGAGAAGGCTTCGATAGAGGATGTAATGAAAGTGCTGTTGGCGTCAAGAAAGCAAGACATGCAGCAGCTATGGGCAACTTGTTCCCACTTGGTGGCGAAATCAGGTCTTCCACCGGAGGTTCTGGCCAAACACCTCCCAATAGACATCGTGGCGAAGATCGAGGAGCTCCGTCTCAAATCCTCCCTGGCGCGGCGCTCTCTGGTGCCGTCACACCATCACCACCACCACCACAGCCACCACCACGCGGCGGCGCTAGACCTGGAGGACCAGAAAATTCGGCGAATGAGGCGCGCGCTTGACTCCTCCGATGTGGAGCTGGTGAAGTTGATGGTGATGGGAGAAGGGCTGAACCTAGACGAGGCGCTGGCGTTACCCTATGCGGTGGAGAGTTGCAGCAGAGAAGTGGTGAAGGCTTTACTTGAGTTGGGTGCAGCCGACGTTAACTATCCCTCCGGGCCGGCGGGGAAGACGCCGCTGCACATTGCGGCGGAGATGGTGTCCCCCGACATGGTGGCGGTGCTGCTGGACCACCACGCGGACCCGAATGTTAGAACCGTTGATGGGGTGACGCCTTTGGACATCCTCAGAACCCTAACCTCGGACTTCCTCTTCAAGGGTGCTGTCCCGGGTTTGACCCACATCGAGCCCAACAAGCTCAGACTTTGCTTGGAGCTTGTTCAGTCCGCGGCTCTTGTCATGTCGCGAGAGGAAGGAAACAATAATGCAAACAACAACAACGCTCATAATTCTTCTGCAGCGCCGATTTACCCACCTCCAATGAACGAGGATCATAACAACAGTAGTAGCAGCAGCGGCAACAACAACAACAACAACAACAACATTGGTAACCTTAACTTGGATTCGAGGTTGGTGTATCTGAACCTTGGCGCCACCGCTTCGATGAGTTCGAGAATGGATAATGCTGAGGACGAGAGAGAAGCCATGAATCAAACCATGTACCACCACCACTCTCATGACTACTAG 1473 0.5621 MSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGSRGGVNSSNSSSRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLVPSHHHHHHHSHHHAAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVESCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNNANNNNAHNSSAAPIYPPPMNEDHNNSSSSSGNNNNNNNNIGNLNLDSRLVYLNLGATASMSSRMDNAEDEREAMNQTMYHHHSHDY 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0517 490 ProSiteProfiles Ankyrin repeat region circular profile. 317 347 - -
Aed4g0517 490 MobiDBLite consensus disorder prediction 400 415 - -
Aed4g0517 490 Pfam BTB/POZ domain 16 112 IPR000210 GO:0005515
Aed4g0517 490 ProSiteProfiles BTB domain profile. 25 110 IPR000210 GO:0005515
Aed4g0517 490 CDD BTB_POZ_NPR_plant 8 163 - -
Aed4g0517 490 Gene3D - 240 365 IPR036770 -
Aed4g0517 490 MobiDBLite consensus disorder prediction 400 445 - -
Aed4g0517 490 SMART ANK_2a 317 346 IPR002110 GO:0005515
Aed4g0517 490 SMART ANK_2a 282 312 IPR002110 GO:0005515
Aed4g0517 490 SMART BTB_4 25 163 IPR000210 GO:0005515
Aed4g0517 490 MobiDBLite consensus disorder prediction 424 445 - -
Aed4g0517 490 Pfam Domain of unknown function (DUF3420) 198 259 IPR024228 -
Aed4g0517 490 Coils Coil 461 481 - -
Aed4g0517 490 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 487 IPR044284 GO:0099402
Aed4g0517 490 PANTHER REGULATORY PROTEIN NPR5 1 487 - -
Aed4g0517 490 SUPERFAMILY Ankyrin repeat 276 360 IPR036770 -
Aed4g0517 490 MobiDBLite consensus disorder prediction 63 82 - -
Aed4g0517 490 MobiDBLite consensus disorder prediction 67 82 - -
Aed4g0517 490 Pfam Ankyrin repeats (3 copies) 265 347 IPR002110 GO:0005515
Aed4g0517 490 Gene3D Potassium Channel Kv1.1; Chain A 3 196 IPR011333 -
Aed4g0517 490 ProSiteProfiles Ankyrin repeat profile. 317 349 IPR002110 GO:0005515
Aed4g0517 490 SUPERFAMILY POZ domain 9 159 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0517 Aed-Chr4 3962197 3966307 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aed4g0517 BTB 5.2e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0517 K14508 - gmx:100816086 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0517 4 3962197 3966307 Aed4g0517 4 3962197 3966307 ECH