Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0501 ATGGTTGCTTTGTTTTCTCCTCCATTGTTCTCAAGCAAGGGATGGCTCTTAGAAGAGGAGCCATTAAGCTATGATGTGTTTCCCTATCAATTTTATGCACCGCAGACACAAATTGAGGTTGAAGTTGAAAGGTCAACTGCACCATCCCCTGACCCTTCCATGGTCAAAAAGCTTAGCCACAACGCTAGTGAACGTGATCGCCGCAAGAAGGTCAATGATTTGGTTTCTTCACTTCGTTCACTTCTTCCTGTGCCAGATCAAACGAAAAAAATGAGCATTCCGACAACAGTTTCGCGGGTCATAAAATACATACCCGAGTTACAGCACCAAGTGAAAGCACTAGCTAAGAAAAAAGAGGAGCTACTGTGTAGAATTTCTGAGCAACTGCAAGGAGATGCAATAGCGAACAAAGAATCTGAAAGGAGGAGAATTTGGCAGCACAACTCTGATTTTGTTGTTTCAACAAGTAGGCTCAATGATTGTGAAGCTGTTGTTCACATTTCCTCTTATGAGTCCCACAAGGTTCCATTGTCTGAGATCTTGCAATGTTTAGAAAATTATAATGGCCTTCTTCTGCTGAATGCTTCTTCCTCTCAAACCTTTGAAGGGAGGAGGGTCTTCTACAACTTGCATTTCCAGGTGCAAAAAACTCATAGATTAGAGTCTGAGATTCTAACTGAGAAGCTTTTGTCAATATATGAGAAGCAAAGATTTTCAAATCAAACTAAAGTTGGCTCTAATTATATATGA 750 0.4067 MVALFSPPLFSSKGWLLEEEPLSYDVFPYQFYAPQTQIEVEVERSTAPSPDPSMVKKLSHNASERDRRKKVNDLVSSLRSLLPVPDQTKKMSIPTTVSRVIKYIPELQHQVKALAKKKEELLCRISEQLQGDAIANKESERRRIWQHNSDFVVSTSRLNDCEAVVHISSYESHKVPLSEILQCLENYNGLLLLNASSSQTFEGRRVFYNLHFQVQKTHRLESEILTEKLLSIYEKQRFSNQTKVGSNYI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0501 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 127 IPR036638 GO:0046983
Aed4g0501 249 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 235 IPR015660 GO:0003700|GO:0006357
Aed4g0501 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 107 IPR011598 GO:0046983
Aed4g0501 249 Coils Coil 104 124 - -
Aed4g0501 249 MobiDBLite consensus disorder prediction 44 66 - -
Aed4g0501 249 Gene3D - 51 137 IPR036638 GO:0046983
Aed4g0501 249 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 235 - -
Aed4g0501 249 SMART finulus 61 113 IPR011598 GO:0046983
Aed4g0501 249 Pfam Helix-loop-helix DNA-binding domain 56 108 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0501 Aed-Chr4 3842062 3843151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0501 51 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 47.594 5.57e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed4g0501 HLH 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0501 - - gmx:100803424 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0501 4 3842062 3843151 Aed4g0501 4 3842062 3843151 ECH