Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0469 ATGAATGACAAGGCACTTGTGAGGCATCTTTCTGCATGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACAAAATGGCGGTTACTAAAACATGGATATGCGAAAAAGCCATGCAGATAAAAGGTAACGAGAGTGCAGAGGAACTGAAATCATGTACATCTGAAGGAGCTCTAAACATACTTTTGCAGGCTATATTTCAAAACACTTGTGCTGAAGTAGTTAAGGATAAAGATGGACAGGACACAATATTGGGAACCCCAACAGAATCAGCACTATTGAAATTTGGCTGTCTTTTGGGTGCTGATTTTGATGCATATTCACAGCGTAGAGAGTATAAGATACTCAAAGTTGAGCCATTCAATTCAGTCCGAAAGAAAATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGTGTCCGAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTGACAAAGTTATTGATTGCAATGGGGAAGTTGTTGATCTTCCTGAAGACCGGGCAAATAATGTATCTGATGTTATAAATGCCTTTGCCTCTGAAGCTTTGAGGACTATTTGTTTGGCCTTCAAAGAGATAAGTGAAACCCATCATGGGGAACCCAAAAACATCCCTGATAGTGGGTATACTCTAATAGCCTTAGTAGGAATCAAGGATCCTGTACGCCCAGGGGTTAAGGAAGCTATTCAAACTTGTATAGCTGCTGGAATAACTGTTCGCATGGTTACTGGTGATAACATAAATACAGCTAAAGCTATTGCTATAGAATGCGGTTTACTTACCGAGAGTGGTCTAGCCATCGAAGGTTCAGACTTTCGTGACTTGTCTCCTGAGCAAATGAAGGATGTCATTCCAAAAATCCAGGTGATGGCACGATCCTTACCGCTGGACAAGCATAAGTTAGTAACCAATTTAAGGAAAATGTTTGGCGAGGTTGTCGCTGTTACTGGCGATGGAACTAATGATGCTCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTTGCCAAAGAAAATGCCGATGTCATTATAATGGATGATAACTTCAGGACTATTGTCAATGTTGTCAAATGGGGACGTTCAGTATACATAAACATTCAAAAATTTGTGCAGTTCCAATTGACAGTTAATGTTGTTGCTCTGGTCATCAACTTCGTTTCTGCATGCATCACTGGATCTGCTCCACTCACTGCTGTTCAGTTGCTTTGGGTGAACTTGATCATGGACACTCTTGGTGCATTAGCCCTGGCTACAGAACCCCCTAACGATGGACTTTTGAAAAGACCCCCAGTTGCAAGGGGAGCAAACTTCATCACCAAACCTATGTGGAGGAATATCATTGGCCAAAGCATATATCAATTAATTATCCTCGGGATTCTAAATTTTGATGGGAAGAGGCTACTCGGAATCACTGGTTCAGATGCAACGAAAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGATATTGATAAGATAAACATATTCAGAGGCTTGTTTGACAGCTGGATATTTCTGGCAATAATTTTTGCCACTGCGGCGTTTCAAGTGGTGATAGTTGAATTCCTTGGAGCGTTTGCCAGCACTGTGCCTCTAAACTGGCAATTCTGGTTACTAAGTGTGCTAATCGGATCAGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAGAGATGCCATTAAGCAACACCATGATGGTTATGAGGCACTGCCATCTGGTCCCGAGCTGGCATAA 1836 0.4221 MNDKALVRHLSACETMGSASCICTDKTGTLTTNKMAVTKTWICEKAMQIKGNESAEELKSCTSEGALNILLQAIFQNTCAEVVKDKDGQDTILGTPTESALLKFGCLLGADFDAYSQRREYKILKVEPFNSVRKKMSVLVGLPDGGVRAFCKGASEIILKMCDKVIDCNGEVVDLPEDRANNVSDVINAFASEALRTICLAFKEISETHHGEPKNIPDSGYTLIALVGIKDPVRPGVKEAIQTCIAAGITVRMVTGDNINTAKAIAIECGLLTESGLAIEGSDFRDLSPEQMKDVIPKIQVMARSLPLDKHKLVTNLRKMFGEVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIIMDDNFRTIVNVVKWGRSVYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGANFITKPMWRNIIGQSIYQLIILGILNFDGKRLLGITGSDATKVLNTLIFNSFVFCQVFNEINSRDIDKINIFRGLFDSWIFLAIIFATAAFQVVIVEFLGAFASTVPLNWQFWLLSVLIGSVSMPIAAILKCIPVERDAIKQHHDGYEALPSGPELA 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0469 611 PANTHER CATION TRANSPORTING ATPASE 1 595 - -
Aed4g0469 611 Gene3D - 3 587 - -
Aed4g0469 611 SFLD C1.7: P-type atpase like 5 380 - -
Aed4g0469 611 Gene3D - 33 232 IPR023299 GO:0000166
Aed4g0469 611 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 1 590 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Aed4g0469 611 PRINTS P-type cation-transporting ATPase superfamily signature 23 37 - -
Aed4g0469 611 PRINTS P-type cation-transporting ATPase superfamily signature 247 257 - -
Aed4g0469 611 PRINTS P-type cation-transporting ATPase superfamily signature 328 347 - -
Aed4g0469 611 PRINTS P-type cation-transporting ATPase superfamily signature 225 236 - -
Aed4g0469 611 PRINTS P-type cation-transporting ATPase superfamily signature 352 364 - -
Aed4g0469 611 PANTHER CALCIUM-TRANSPORTING ATPASE 1 595 - -
Aed4g0469 611 SFLD p-type atpase 5 380 IPR044492 -
Aed4g0469 611 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 295 416 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0469 611 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 29 237 IPR023299 GO:0000166
Aed4g0469 611 Pfam Cation transport ATPase (P-type) 83 165 - -
Aed4g0469 611 PRINTS H+-transporting ATPase (proton pump) signature 183 201 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0469 611 PRINTS H+-transporting ATPase (proton pump) signature 328 344 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0469 611 PRINTS H+-transporting ATPase (proton pump) signature 360 385 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0469 611 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 589 IPR023298 -
Aed4g0469 611 Gene3D - 20 373 IPR023214 -
Aed4g0469 611 SUPERFAMILY HAD-like 22 433 IPR036412 -
Aed4g0469 611 Pfam Cation transporting ATPase, C-terminus 413 586 IPR006068 -
Aed4g0469 611 ProSitePatterns E1-E2 ATPases phosphorylation site. 25 31 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0469 Aed-Chr4 3534229 3545665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0469 1 608 Primary Pumps ATPases AT2G41560 73.026 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0469 K01537 - gmx:100783489 1117.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0469 4 3534229 3545665 Aed4g0469 4 3534229 3545665 ECH
Aed4g0469 4 3534229 3545665 Aed8g1331 8 17033909 17042763 PCT