Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0443 ATGGATATTGAACTGATATGCTACAAAGTATATTGTTTGGAGCACCGAGGTTATATTAAACATAAGTGCACAAAGGCCAACAAACAAGATGTCACAGTTGTGATATGTCCTCTTTGTGCCAAAGGAGTTCGCCTCATTCAAAACGAAGACCCAAACATAACATGGGACAATCATGTTAACATTGAGTGTGACCCATCAAATTACGAGAAAGTCACAAAGAAGAGAAAATGCCCTGCCCCTGGTTGCAAAGAGGTCTTGGTATTCTCCAACACAATCAAGTGCAGGGACTGCTTGGAAGATCATTGTTTGAAGCATCGGTTTGGCCTCGATCACCAATGTTCCGGTCCCAAAAAGTTGGAGACAAGTTTTTCTTTCATGGGTCTTTTGAATAGGAGTAGTAGAAAAGAGGAGCCAATTCCAGAACCCAATTTAACTTCAACTGCATCAACTAGGTGGTCTTCAAGCTTTCTCAGTGTGGCTTCCAATATTCGTGCTTCGGCTGAAGCCAGCATGTTGAAATTGGGCAATGAAATAAACCATGTTTGGCAGGCAGCTACTACTACAAGAGATGGGGTGGCACAGAGTAACAGAAATGATCATCATCAAGGGGAACAATGCCCTCAGTGTGGAGAAAAGTTTTCCTCTGTGACTGGTTTGGTGGATCATGTGCAAAAAGTTCATGAAGGAAATGAGAACCGGTTAGGGGTTAAGAAGATTAATGCATGTCCTAAGTGTAGTAGGGGATTTCTAGACCCGGTTTCCCTTGTGGAGCATGTTGAGAGGGATCATGGTGGTGGTTCTGGAGCCTAG 810 0.4333 MDIELICYKVYCLEHRGYIKHKCTKANKQDVTVVICPLCAKGVRLIQNEDPNITWDNHVNIECDPSNYEKVTKKRKCPAPGCKEVLVFSNTIKCRDCLEDHCLKHRFGLDHQCSGPKKLETSFSFMGLLNRSSRKEEPIPEPNLTSTASTRWSSSFLSVASNIRASAEASMLKLGNEINHVWQAATTTRDGVAQSNRNDHHQGEQCPQCGEKFSSVTGLVDHVQKVHEGNENRLGVKKINACPKCSRGFLDPVSLVEHVERDHGGGSGA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0443 269 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 7 267 - -
Aed4g0443 269 Pfam C2H2-type zinc finger 205 227 - -
Aed4g0443 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 232 IPR013087 -
Aed4g0443 269 Pfam AN1-like Zinc finger 77 117 IPR000058 GO:0008270
Aed4g0443 269 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 7 267 - -
Aed4g0443 269 ProSitePatterns Zinc finger C2H2 type domain signature. 242 263 IPR013087 -
Aed4g0443 269 Gene3D - 57 124 IPR035896 -
Aed4g0443 269 SMART c2h2final6 204 227 IPR013087 -
Aed4g0443 269 SMART c2h2final6 240 263 IPR013087 -
Aed4g0443 269 ProSitePatterns Zinc finger C2H2 type domain signature. 206 227 IPR013087 -
Aed4g0443 269 SUPERFAMILY beta-beta-alpha zinc fingers 205 259 IPR036236 -
Aed4g0443 269 ProSiteProfiles Zinc finger AN1-type profile. 71 121 IPR000058 GO:0008270
Aed4g0443 269 SUPERFAMILY AN1-like Zinc finger 36 119 IPR035896 -
Aed4g0443 269 Gene3D Classic Zinc Finger 181 266 - -
Aed4g0443 269 SUPERFAMILY AN1-like Zinc finger 6 35 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0443 Aed-Chr4 3182552 3183684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0443 7 269 C2H2 Transcription Factor Family AT2G41835 56.604 2.37e-94 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed4g0443 zf-AN1 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0443 - - gmx:100806459 461.455