Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0435 ATGAATCACGTTTCCATTGACACTGAAGATTCTCTTGCAAGCTTGCTTGAGCTTGCAGCGAACAACGATGTCGAGGGTTTCAAACGGTTAATCGAGTGCGATCCTTCCTCCATAGACGAGGTTGGGTTATGGTACGTCCGTCACAAAGAGTCAAAGAAGATGGTCAACGAGCAAAGAACACCTTTGATGGTTGCTGCCACCTACGGTAGCATTGATGTCATGAAGCTGATTCTCTCTCTATCCGGAGCCGATGCAATAAACCTCTCTTGCGGCCTTGACAAAAGCACCGCACTTCACTGTGCAGCTTCAGGCGGGGCTGAAAACGCTGTCGACGCTGTGAAACTGCTTCTAGAAGCAGGCGCTGATGTGAATTCTGTTGATGCCAATGGCCACCGACCCGGGGATGTTATCGTTTCTCCTCCAAAGCTTGAACATGTAAAGAACAGTCTCGAAGAGCTTCTTAGGGCGATCACAGCCACAAGCTTATCATGCAATGCATATTCTCCTCCTTCTGAGAGGAAAGAGTATCCGGTTGATCCGTCTCTTCCGGACATCAAGAACAGCGTGTACTCAAGCGACGAATTCCGGATGTACTCGTTCAAGGTTCGGCCTTGTTCGCGTGCTTATTCGCACGATTGGACTGAGTGCCCTTTCGTTCATCCTGGGGAGAATGCGAGAAGAAGGGACCCGAGGAAGTTCCATTACAGCTGCGTCCCTTGTCCTGATTTTCGAAAGGGTGCTTGCAGGAGAGGAGACATGTGTGAATACGCTCATGGGGTTTTCGAGTGCTGGCTGCATCCTGCGCAGTATCGAACTCGTTTATGCAAAGATGGAACTAGCTGTTCGAGAAGGGTTTGCTTCTTTGCCCACACCGCTGAAGAGCTTCGACCATTGTATGTTTCAACCGGCTCTGCTGTTCCTTCTCCTCGGTCTATGGATTTTGTTGCAGCCATGAACATGTTGCCACCTGGTTCTCCTTCCTCTCTGTTGTCTCCTTCACCCTTCACTCCACCTATGTCACCTTCTGGGAATGGAATTTCTTCACACTCTTCCCTTGCTTGGCCGCATCCGAACATTCCAGCTCTGCATCTTCCGGGAAGTAGTAGTGTTCACTCCAGTCGATTGAGATCTTCATTCAATGCTAGAGATATTCCCGTGGATGGTTTTGATTTGTTACCTGATTATGATCAGCAGCAGCAGCTTCTTAACGAGCTCTCGTGCCTCTCTCCACATGCTATGAACCGCTTTGGTTGCATGAAACCCCTGTCCCCTTCAAATCTTGATGATCTGTTTTCTGCTGCTGAGAGTTCTTCTCCTCGATATGCCGATCCGACATTGGCTTCAGCTGTCTTCTCTCCGACTCACAAATCAGCTGTCTTCAATCAGTTTCAGCAGCAGCAAAGCTTGTTGGCGCCACTGAACACAAATTTTTCCTCTAAAAACGTTGAGCATCCTATGTTGCAGGCCTCATTTGGTATTCAGACATCATCAGAAAGAATGTCTCCAAGACACGTGGAGCAACAACCTATCTCTCCAATGGGTTCTAGGATGTCTATGCTAGCTCAACGCGATAGGCAGCAGTTTCGCAGCTTAAGCTTCCGCGAACTCGGAACCAATTCTGCGGCTGCTGCTGCTGCCAATTCTTGGTCTAAATGGGGATCGCCTAATGGTAGTAAGTTTGATTGGCCAGTTGGTGCTGATGAAGTAGGTAAGCTAAGAAGGTCATCATCATTTGAGCTTGGTAACAATGGTGAAGAGCCTGATTTATCTTGGGTGCAGTCACTTGTTAAAGAATCACCAGCGGAAGTTAAGGATAAATTTGCAACCACTGTCTCTAATGTTGCAGCAGCAGCAGCAGCAGCTGGATCCTCCAGTGAGGGATCAAACATGAGCACACAAATGGAGTCTGTTGATCATGCTGTACTGGGAGCATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 1980 0.4833 MNHVSIDTEDSLASLLELAANNDVEGFKRLIECDPSSIDEVGLWYVRHKESKKMVNEQRTPLMVAATYGSIDVMKLILSLSGADAINLSCGLDKSTALHCAASGGAENAVDAVKLLLEAGADVNSVDANGHRPGDVIVSPPKLEHVKNSLEELLRAITATSLSCNAYSPPSERKEYPVDPSLPDIKNSVYSSDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSMDFVAAMNMLPPGSPSSLLSPSPFTPPMSPSGNGISSHSSLAWPHPNIPALHLPGSSSVHSSRLRSSFNARDIPVDGFDLLPDYDQQQQLLNELSCLSPHAMNRFGCMKPLSPSNLDDLFSAAESSSPRYADPTLASAVFSPTHKSAVFNQFQQQQSLLAPLNTNFSSKNVEHPMLQASFGIQTSSERMSPRHVEQQPISPMGSRMSMLAQRDRQQFRSLSFRELGTNSAAAAAANSWSKWGSPNGSKFDWPVGADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPAEVKDKFATTVSNVAAAAAAAGSSSEGSNMSTQMESVDHAVLGAWLEQMQLDHLVAQQN 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0435 659 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 162 656 - -
Aed4g0435 659 MobiDBLite consensus disorder prediction 327 349 - -
Aed4g0435 659 Pfam Ankyrin repeats (3 copies) 18 127 IPR002110 GO:0005515
Aed4g0435 659 ProSiteProfiles Zinc finger C3H1-type profile. 239 261 IPR000571 GO:0046872
Aed4g0435 659 SMART c3hfinal6 234 260 IPR000571 GO:0046872
Aed4g0435 659 SMART c3hfinal6 269 292 IPR000571 GO:0046872
Aed4g0435 659 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 239 259 IPR000571 GO:0046872
Aed4g0435 659 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Aed4g0435 659 SMART ANK_2a 10 40 IPR002110 GO:0005515
Aed4g0435 659 SMART ANK_2a 57 88 IPR002110 GO:0005515
Aed4g0435 659 SMART ANK_2a 93 125 IPR002110 GO:0005515
Aed4g0435 659 PANTHER UNKEMPT FAMILY MEMBER 162 656 IPR045234 -
Aed4g0435 659 PRINTS Ankyrin repeat signature 112 126 IPR002110 GO:0005515
Aed4g0435 659 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Aed4g0435 659 Gene3D - 234 297 - -
Aed4g0435 659 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 160 - -
Aed4g0435 659 Gene3D - 8 160 IPR036770 -
Aed4g0435 659 SUPERFAMILY Ankyrin repeat 15 148 IPR036770 -
Aed4g0435 659 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Aed4g0435 659 PANTHER UNKEMPT FAMILY MEMBER 1 160 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0435 Aed-Chr4 3117361 3119340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0435 9 652 C2H2 Transcription Factor Family AT5G12850 50.994 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed4g0435 Ank_2 3.7e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0435 - - ccaj:109796653 1044.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0435 4 3117361 3119340 Aed4g0435 4 3117361 3119340 ECH