Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0426 ATGGCTGACCCCTACTCCAACTTCTTCTCTTCCTTCCGTTTCAACCATCACAACCATTTCATCCCTTCTCATCCAAACCCTTCTCCACAACACACCAACAACACCTTTTTCCACTACCACAACACTAGTACTACGACTTTTTCTTCTTTGCCACCTTCTCCTCCTCTGAGAGAAGAACTACCCCTCTTGAGGCTGAGTCCAACAAAGCAAGAGTTGGAGGAGGAAGATGAATTAGAGGATCGATATCACCACTGCACTAGTGGTGGAGCAGCCATGGATGTGGAAGAGTCGAGGATCCATCTCAAAGAGGAAGAAGATCATGACGATGAAGATGGAACCACTACTGTCACTGTTGCACTCCACATAGGGTTGCCATGCCCTAGTGCTGCTGAGATGGCTTCTGTTCTCTCTTCCTCCTCTGAGATCAGTGCTCACAACAAAGATCATGGAGATTCTTCTTCTTCTTCTGCTGGCTTCAGACTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGCCCTATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGAACCCAGCCAACAGGGATGCTGAGGCTACCATGCTATTGTTGTGCACCAGGGTGCAGAAACAACATTGACCACCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACACTCCAAACTCACTACAAGAGGAAGCACGGGATCAAGCCCTTCATGTGCAGGAAATGCGGCAAGGCCTTTGCTGTGAGGGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGCATCTGCGGCTCCGATTTCAAGCACAAGAGGTCCCTTAAGGACCACATTAAAGCCTTTGGGAGTGGCCATGCAGCTTATGGGATCGATGGCTTCGAAGAAGAAGATGAGCCTGCATCAGAAGTAGAGCAAGATAATGATGATTAG 984 0.4848 MADPYSNFFSSFRFNHHNHFIPSHPNPSPQHTNNTFFHYHNTSTTTFSSLPPSPPLREELPLLRLSPTKQELEEEDELEDRYHHCTSGGAAMDVEESRIHLKEEEDHDDEDGTTTVTVALHIGLPCPSAAEMASVLSSSSEISAHNKDHGDSSSSSAGFRLNKGQYWIPTPSQILIGPTQFSCPMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDD 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0426 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 272 IPR013087 -
Aed4g0426 327 PANTHER ZINC FINGER PROTEIN WIP2 1 326 IPR043584 GO:0003700|GO:0010468
Aed4g0426 327 Gene3D Classic Zinc Finger 230 305 - -
Aed4g0426 327 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 326 - -
Aed4g0426 327 SUPERFAMILY beta-beta-alpha zinc fingers 234 272 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0426 Aed-Chr4 3036436 3040064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0426 1 326 C2H2 Transcription Factor Family AT3G57670 60.526 9.10e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed4g0426 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0426 - - gmx:100802907 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0426 4 3036436 3040064 Aed4g0426 4 3036436 3040064 ECH
Aed4g0426 4 3036436 3040064 Aed1g1266 1 12014500 12017564 ECH
Aed4g0426 4 3036436 3040064 Aed8g1392 8 18227551 18230215 PCT