Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0423 ATGGAATCAGAGAACGGTGACACAACAAGGTCCAAAAAGATGGAAGAGTATGAAGTCATAGAGCAAATTGGAAGAGGAGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAGCAGACAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATATATTGTGGATTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATCAGGGCAGAGAACATAAAGAAAGCTCGAGGGTCATTTTTTCCCGAGGAGAAAGTCTGTAAATGGTTGACTCAGTTGTTGATAGCTGTAGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACAAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGTTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCAGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGGAAAAACCCAGAACATAGGCCAACCGCAGCCGAATTATTAAGGCATCCGCTTTTACAGCCTTATGTTCTTCGCTGTCATAATGCATCATCTAATTTTCTTCCAGTATATCCCCTAGTTAATCCAAAGGATAAAACAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAAGACAAAGAAGCAAGTTTAGTAAATCATTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATATACAGATAAGCAATCTTCCTAATGATGCGGTAACAATCTCAACCAGTGCAGAAGACAATCTTGAGACTAGGATGGCTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGTAGTGTGTGCAAGGAAGACTTTAAATGTAGACCTGCAAGGGAAATGTCTGACGAGATCTCTTCAAAGAGTACACAAGATTCTCAGCATGAAGAACAGAGATTTGCTGCTAAACATTTTCATAAATTAGAAGAAGACAACATAAATGCAGTGACCACAGAAGTTGAAGATGCTTTTTGCAATGAAGGTTTGGATAGTGCAGAAGCACTGAGGGAAGATTTGTTGAACCTTGAGGACTCTGGTAAATCAACAATATCCAGTGCAGGCAGTAGCAGCACTGATAAAGACAAGTCCATCAATGAGAAAAGGTCATCACTAATTGTGCATCCTATTAGGGTTGAACACGGCACTGAATCTGGAAACCGCTCGAAGAAAAGTGAAAACCTTGATGTATTTACAGAAGTCTCACACATGAACTGCCTGACATCTGCAAGTAATAATGCACTTTCAGTTAAGGATGATGACATATCAAATGGACACATTCTTTGCTCAACACATAAAGAAGATGATAATGCAGTGGGGGTTGATCAGGCACCGTGTGGCGTTTCATTGAGTGTAATAACTGAAGTAGATGGTGAAGAAACAATCAAGACTCTGTTGGATAGTCCCTGCCAGCAGAGAGCCGATGCTCTGGAATCTCTGCTCGAATTATGCGCTCAGCTACTCAAGCAAGATAAACTTGAAGAACTCGCTGGAGTGCTAAGACCATTTGGGAAAGAAGCTGTCTCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATATCTGCCCAAAAATTCAATCCCGAAACCTAG 1956 0.4126 MESENGDTTRSKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVDYKDAWVEKEDHICIITGYCEGGDIRAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLASSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNFLPVYPLVNPKDKTRRSNKSSGGKDHKDKEASLVNHLERIHPIEGNGDIQISNLPNDAVTISTSAEDNLETRMADLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKCRPAREMSDEISSKSTQDSQHEEQRFAAKHFHKLEEDNINAVTTEVEDAFCNEGLDSAEALREDLLNLEDSGKSTISSAGSSSTDKDKSINEKRSSLIVHPIRVEHGTESGNRSKKSENLDVFTEVSHMNCLTSASNNALSVKDDDISNGHILCSTHKEDDNAVGVDQAPCGVSLSVITEVDGEETIKTLLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLISAQKFNPET 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0423 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Aed4g0423 651 Gene3D Phosphorylase Kinase; domain 1 2 96 - -
Aed4g0423 651 MobiDBLite consensus disorder prediction 295 316 - -
Aed4g0423 651 ProSiteProfiles Protein kinase domain profile. 17 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0423 651 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Aed4g0423 651 CDD STKc_Nek 17 272 - -
Aed4g0423 651 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 492 634 - -
Aed4g0423 651 SMART serkin_6 17 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0423 651 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0423 651 MobiDBLite consensus disorder prediction 467 490 - -
Aed4g0423 651 Gene3D Transferase(Phosphotransferase) domain 1 99 329 - -
Aed4g0423 651 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 492 634 - -
Aed4g0423 651 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 11 488 - -
Aed4g0423 651 MobiDBLite consensus disorder prediction 297 316 - -
Aed4g0423 651 SUPERFAMILY Protein kinase-like (PK-like) 14 300 IPR011009 -
Aed4g0423 651 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 11 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0423 Aed-Chr4 3010064 3016467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0423 23 273 MAP Kinase Kinase Kinase AT1G53570 32.422 3.05e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Aed4g0423 Pkinase 1.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0423 K08857 - gmx:100793379 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0423 4 3010064 3016467 Aed4g0423 4 3010064 3016467 ECH
Aed4g0423 4 3010064 3016467 Aed8g1397 8 18313129 18323837 PCT