Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0421 ATGGAGTCTCACAATGAGACTGGATGCCAAGCTCCTGAACGCTCCATTCTTTGCATCAATAGTTGTGGCTTCTTTGGAAAAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGATGAAGCAGGATCAGGACAAACTTGCAGTATCGTCCGTTGAGAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGCTGTGACTACCGGTGCTGTTGATGTTCAAGTCGGAACTGTGGAGGTCAAGACTGTTTCCGTTTCCGCTCAGACTTCCACAGATTTGTCCTCTGGTGAGAGTTTGCAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTCGGGTTAACTGGTTTCAGCTGTAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCTCTTTCGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCGGTAATTAAGGCAGATAAGCTTGACAAAATCTAG 528 0.4621 MESHNETGCQAPERSILCINSCGFFGKAATMNMCSKCYKDMLMKQDQDKLAVSSVENIVNGSSNGNGKQAAVTTGAVDVQVGTVEVKTVSVSAQTSTDLSSGESLQMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCSFDYRTVGQDAIAKANPVIKADKLDKI 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0421 175 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Aed4g0421 175 SMART AN1_Zf_4 116 153 IPR000058 GO:0008270
Aed4g0421 175 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Aed4g0421 175 Pfam AN1-like Zinc finger 116 152 IPR000058 GO:0008270
Aed4g0421 175 ProSiteProfiles Zinc finger AN1-type profile. 110 156 IPR000058 GO:0008270
Aed4g0421 175 Gene3D - 89 171 IPR035896 -
Aed4g0421 175 Gene3D - 1 64 - -
Aed4g0421 175 SUPERFAMILY AN1-like Zinc finger 106 170 IPR035896 -
Aed4g0421 175 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Aed4g0421 175 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 2 175 - -
Aed4g0421 175 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 175 - -
Aed4g0421 175 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0421 Aed-Chr4 3002498 3003025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0421 6 175 C2H2 Transcription Factor Family AT3G52800 41.176 6.81e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0421 - - gmx:100499995 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0421 4 3002498 3003025 Aed4g0421 4 3002498 3003025 ECH
Aed4g0421 4 3002498 3003025 Aed1g1268 1 12030199 12030717 ECH