Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0420 ATGGCTACTACTACGTTCTGTACATACCTATTCCTAATGCTCTCTGTGATCCTTTCAATCTTCAATCTCACTTCATCTTCTTCATCAGAGGGTGATATTCTCCTCTCCTTCAAGGCCTCCATTGAAGACTCAAAGAAGGCCTTGTCTAACTGGTCCAACACTACTTCCTCAAGCCACCACTGTAACTGGACTGGAATCACTTGCTCCACTACAACACCTTCACTCTCAGTAACTTCCATCAACCTTCAAAGCCTGAACCTTTCTGGGGATATCTCATCTTCCATATGTGAGCTTCCAAATCTGTCTTATCTCAACCTTGCAGATAACATCTTCAACCAGCCCATCCCTCTTCATCTCTCTCAGTGCAGTTCCTTGGAGACTTTGAATCTCAGCACCAACCTCATATGGGGCACTATCCCATCTCAGATTTCTCAGTTTGCTTCATTGAGAGTGTTTGATTTGAGCAGAAACCATGTTGAGGGAAACATTCCTGAAAGCTTAGGCTCCTTGAAGAACCTCCAAGTCCTCAACATGGGAAGCAACTTGCTTTCAGGTAGTGTACCTGCTGGCTTTGGCAATCTAACCAAACTTGAAGTCCTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCTGAGGATATTGGTGTGCTTGGAAACCTTAAGCAACTAATGCTGCAAAGCTCTTCTTTTCAAGGTGAAATTCCAGATTCTCTGGTGGGCCTGGTTAGTTTGACCCATTTGGATCTCTCTGAGAACAACCTAACAGGTGGGGTTCCAAAGGCTCTACCATCTTCTCTCAAGAACCTGGTTTCATTAGATGTTTCACAAAACAAGCTTCTGGGGCCATTTCCTAGTGGCTTATGCAATGGACAAGGCCTCATAGACCTCAGTCTCCACACAAATGCCTTCACTGGCTCAATACCAAACTCCATTGGTGAATGTAAGAGCCTTGAGAGATTCCAAGTCCAGAACAATGGCTTCTCTGGAGATTTCCCCAATGGACTGTGGTCATTACCTAATATCAAGCTCATCAGAGCTGAAAACAACAGATTCTCAGGACAGATACCTCAGTCAATATCAGAAGCTTTTCAGCTGGAGCAAGTTCAGGTTGACAACAACAGCTTTTCTGGTAAAATTCCTCAAGGTCTTGGCCTTGTCAAGAGCTTATACAGATTCTCTGCTTCTCTCAACCGTTTCTATGGTGAACTTCCTCCAAACTTTTGTGACTCACCAGTAATGAGCATAGTAAACCTCTCCCACAATTCTCTTTCTGGTGAAATCCCAGAGCTGAAAAAATGCAGGAAACTAGTTTCATTGTCTTTGGCTGATAACAGTCTAATTGGAGAAATACCCTCTTCCCTTGCTGAGCTACCTGTTCTCACCTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTCCAAAACTTAAAGCTTGCACTTTTCAATGTGTCCTTCAATCAGCTATCAGGTAAAGTACCATACTCCTTGATTTCAGGTCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTCTGTGGCCCTGGATTGCCTCACTCTTGTTCTGATGACATGCCAAAGCACCACATCGGTGGCATCACAACCTTAGCATGTGCACTCATCTCTTTAGCCTTTGTTGCTGGAACTGCCATTGTGGTTGGTGGGTTTATTTTGTATAGGAGATCTTGCGAGGGGAATCAAGTAGGGGCTTGGCGCTCGGTGTTCTTCTATCCTCTCAGAATTACTGAGCATGATCTTCTGATAGGGATGAATGAGAAAAGCTCAATGGGAAATGGTGGTGGGGTTTTTGGTAAAGTTTATGTTGTGAATTTGCCTAGTGGTGAACTAGTAGCTGTTAAGAAGTTGGTTAATTTTGGAAACCAGTCCTCAAAAAGTTTGAAGTCTGAGGTAAAGACTTTGGCAAAGATTAGGCATAAGAATGTTGTTAAGATTCTGGGGTTCTGCCACTCTGATGAGTCAGTGTTTCTCATTTATGAGTATTTGCAAGGAGGGAGCTTAGGGGATTTGGTTTCTCGTCAGAATTTTCAGTTGCAGTGGGGAATTCGATTAAAAATTGCTATTGGAGTTGCCCAAGGACTGGCATATCTTCACAAGGATTATGTCCCTCACTTGCTTCACAGAAATGTCAAGTCTAGTAACATTTTGCTGGATGCAAACTTTGAGCCAAAACTCACAGATTTTGCTCTTGATCGAGTTGTGGGAGAGGCTGCATTTCAATCAGTTTTGAACTCCGAAGCAGCATCTTCATGTTACATTGCACCAGAAAATGGTTACAGTAAGAAAGCAACTGAACAATTGGACACCTACAGCTTTGGTGTGGTATTGCTGGAGCTAGTGAGTGGCAGGGAAGCAGAGCAAACAGAGTCAAGTGATTCACTTGACATAGTAAAGTGGGTTAGAAGGAAAGTGAACATCACAAATGGGGTGCAACAAGTTCTTGACCCTAAGATTTCACACACTTGTCACCAACAAATGATTGGAGCTTTAGACATTGCACTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGACCATCCATGGCAGAAGTTGTTAGAGGCCTTCAGTCACTGGAGTCAAGAACAACTTGCATTGCAAATTTGCATGAACCAAATGAGGAACCATCAACCCTCCATTCCAGTCTGAACTTCTAA 2688 0.4342 MATTTFCTYLFLMLSVILSIFNLTSSSSSEGDILLSFKASIEDSKKALSNWSNTTSSSHHCNWTGITCSTTTPSLSVTSINLQSLNLSGDISSSICELPNLSYLNLADNIFNQPIPLHLSQCSSLETLNLSTNLIWGTIPSQISQFASLRVFDLSRNHVEGNIPESLGSLKNLQVLNMGSNLLSGSVPAGFGNLTKLEVLDLSQNPYLVSEIPEDIGVLGNLKQLMLQSSSFQGEIPDSLVGLVSLTHLDLSENNLTGGVPKALPSSLKNLVSLDVSQNKLLGPFPSGLCNGQGLIDLSLHTNAFTGSIPNSIGECKSLERFQVQNNGFSGDFPNGLWSLPNIKLIRAENNRFSGQIPQSISEAFQLEQVQVDNNSFSGKIPQGLGLVKSLYRFSASLNRFYGELPPNFCDSPVMSIVNLSHNSLSGEIPELKKCRKLVSLSLADNSLIGEIPSSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPGLCGPGLPHSCSDDMPKHHIGGITTLACALISLAFVAGTAIVVGGFILYRRSCEGNQVGAWRSVFFYPLRITEHDLLIGMNEKSSMGNGGGVFGKVYVVNLPSGELVAVKKLVNFGNQSSKSLKSEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLQGGSLGDLVSRQNFQLQWGIRLKIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDANFEPKLTDFALDRVVGEAAFQSVLNSEAASSCYIAPENGYSKKATEQLDTYSFGVVLLELVSGREAEQTESSDSLDIVKWVRRKVNITNGVQQVLDPKISHTCHQQMIGALDIALRCTSVVPEKRPSMAEVVRGLQSLESRTTCIANLHEPNEEPSTLHSSLNF 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0420 895 PANTHER - 5 878 - -
Aed4g0420 895 SMART LRR_typ_2 243 266 IPR003591 -
Aed4g0420 895 SMART LRR_typ_2 268 292 IPR003591 -
Aed4g0420 895 SMART LRR_typ_2 98 122 IPR003591 -
Aed4g0420 895 SMART LRR_typ_2 170 193 IPR003591 -
Aed4g0420 895 SMART LRR_typ_2 459 482 IPR003591 -
Aed4g0420 895 SMART LRR_typ_2 194 219 IPR003591 -
Aed4g0420 895 Pfam Leucine rich repeat 148 206 IPR001611 GO:0005515
Aed4g0420 895 Pfam Leucine rich repeat 221 281 IPR001611 GO:0005515
Aed4g0420 895 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 878 - -
Aed4g0420 895 SUPERFAMILY Protein kinase-like (PK-like) 605 872 IPR011009 -
Aed4g0420 895 Pfam Leucine rich repeat N-terminal domain 28 69 IPR013210 -
Aed4g0420 895 Gene3D Phosphorylase Kinase; domain 1 604 674 - -
Aed4g0420 895 Gene3D Ribonuclease Inhibitor 158 264 IPR032675 -
Aed4g0420 895 Gene3D Ribonuclease Inhibitor 29 149 IPR032675 -
Aed4g0420 895 Gene3D Transferase(Phosphotransferase) domain 1 675 884 - -
Aed4g0420 895 ProSiteProfiles Leucine-rich repeat profile. 461 484 IPR001611 GO:0005515
Aed4g0420 895 ProSiteProfiles Protein kinase domain profile. 598 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0420 895 SUPERFAMILY L domain-like 209 526 - -
Aed4g0420 895 Pfam Leucine Rich Repeat 462 483 IPR001611 GO:0005515
Aed4g0420 895 Pfam Protein kinase domain 605 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0420 895 Gene3D Ribonuclease Inhibitor 265 530 IPR032675 -
Aed4g0420 895 SUPERFAMILY L domain-like 27 304 - -
Aed4g0420 895 PRINTS Leucine-rich repeat signature 268 281 - -
Aed4g0420 895 PRINTS Leucine-rich repeat signature 246 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0420 Aed-Chr4 2993438 2997242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0420 34 869 Receptor kinase-like Gene Family AT5G06940 65.993 0.0 1084
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aed4g0420 Pkinase 6.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0420 - - gmx:100794428 1584.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0420 4 2993438 2997242 Aed4g0420 4 2993438 2997242 ECH