Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0416 ATGCTTCTTTTTCCTTCTTGTGATTTCCCTTCTAATGGTTCTGTGTTAGATTATCAAGTAGCTTACGTATCTCCTCTTTTAGCCTTTAACCTTAACTTGCACGTGGCGTGCTTAAAGTCTATTCTTCACCACGGGCAAGATGCTTTAGCTTCTCATTTCAAAAGGGGTGATGAGGATGCTGCTAAAAGCACTGTGGATTCTGGTTACCTGCCCAGGGATATAAGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCCAGAAACAATGCTAAAGTAAACAAAGATGTGCCTGATGATGTAGGTAGTTCCTTTAGTTCCAAGATGGCAGAGGACAACAATCATGGGAAAGTTTCACCTCAGATTACTTGGAAAGAAGACTTGTTGAATGCTTTGAAACGATCAAAGAAAAGAAATGCATCAGCGTTGGGTACTCCAAAGGTTCCAAATGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAGTCAATTCTGGATACTGTTCAGTTACCTCTACTGCATAAAGATCTATTTTCATCTGGATTACGTAAGCGATCTGGTGTTCTTTTGTACGGTCCCCCTGGAACTGGCAAAATTTCTAACACCATTTCCTTGCACTTTTATTTAATAACAGAGTGTTCCTTAAATTTTCTTAGCGTGAAAGGTCCTGAACTGATCAACATGCATGCCAGGTCAGCACGTCCATGTGTTATCTTCTTTGATGAGCTTAATTCTCTTGCACCTGCTCGGTGCGTCTGGAGATTCTGGGGTTTGGACAGAGTGGTTTCTCAAGTGATTTCCTATTCTGAGCAAGACCATGATATGCTTGCAGAGATTGACGGCTTACGTGATTCCTCACAGGATCTGTTAATTATAGGTGCAAGTAATAGACCAGACTTGATAGACCCAGCACTTCTGCGCCCTGGTCGATTTGACAAACTGCTATATGCTGGAGTTAACTCTGATGCATCTTACAGGGAGCGATGTCTCACTTTACTCCATAGCAAAAAAATTTCCACCAAACTTCACTGGTGCAGACATGTATGCTTTATGTGCAGATGCTTGGTTCCATGCTGCAAAGCACAAAGTAAGTTTGACCAGCATCACAGCATCTGTTGTTATATGGTTTTGATTGCAAATCCTGAGTCTTCCAGCCAAGATAATGAAGCAGAATCTGTTGTTGTTGAATACAATGATTTTGTCCAGTTCTTAGAAGAGCTGTCGCCTTCCCTCTCAATGGCTGAGCTTAAGAAGTACGAGCAACTGAGAGATCAGTTTGAAGGCACCTCTAAATGA 1302 0.4171 MLLFPSCDFPSNGSVLDYQVAYVSPLLAFNLNLHVACLKSILHHGQDALASHFKRGDEDAAKSTVDSGYLPRDISALIADAGANLFPRNNAKVNKDVPDDVGSSFSSKMAEDNNHGKVSPQITWKEDLLNALKRSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKISNTISLHFYLITECSLNFLSVKGPELINMHARSARPCVIFFDELNSLAPARCVWRFWGLDRVVSQVISYSEQDHDMLAEIDGLRDSSQDLLIIGASNRPDLIDPALLRPGRFDKLLYAGVNSDASYRERCLTLLHSKKISTKLHWCRHVCFMCRCLVPCCKAQSKFDQHHSICCYMVLIANPESSSQDNEAESVVVEYNDFVQFLEELSPSLSMAELKKYEQLRDQFEGTSK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0416 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 427 IPR027417 -
Aed4g0416 433 CDD AAA 184 320 - -
Aed4g0416 433 Pfam ATPase family associated with various cellular activities (AAA) 190 318 IPR003959 GO:0005524|GO:0016887
Aed4g0416 433 PANTHER PEROXISOME ASSEMBLY FACTOR 2 66 429 - -
Aed4g0416 433 PANTHER AAA-FAMILY ATPASE 66 429 - -
Aed4g0416 433 Gene3D - 148 422 IPR027417 -
Aed4g0416 433 ProSitePatterns AAA-protein family signature. 291 309 IPR003960 GO:0005524|GO:0016887
Aed4g0416 433 SMART AAA_5 186 324 IPR003593 -
Aed4g0416 433 Gene3D - 322 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0416 Aed-Chr4 2961290 2963926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0416 147 347 Calmodulin-binding Proteins AT3G56690 39.908 3.46e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0416 K13339 - gmx:100820183 492.271