Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0412 ATGGATCAAGCCCCGGGAGGATTGCGCGGATCCGTTCACGACGGCGCCACACTCGAGTCAATTCAATTCAACGAAGAAATTCAGGGCATTATGGCGCCGGCGCCGGCGCCGGAAAACGCGAGCTCGTTTACCGCGCTGCTTGAACTCCCGCCGACGCAGGCGGTGGAGCTCCTTCACTCGCCGGAATCCGACGGCGCTCGGAAACCGCCTAATTGCCACCTCAGCGCGAACCAGAAACCCTACTCGCTCAACTCTTTCGGTAGCAATTTGACCTTCCCTTCCAACGCCGCCTTGATCGAACGCGCTGCGAAGTTCTCAGTGTTCGCCGGCGAGAACTCGCCGCCGGCGCCGGGGGAGGCGAGCCTGGTTCCGGCCGTTTCCGGTTCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCGTGCTCGAGCTCGAGGCTGGGTTGCATTTCGGATCCCGCGGTTGATAATAACAATCAGAGGACCGCCAAGAGAAAGGAGCGAGAGAAGAAGGTTAAAGGATCATTGAAGAAGAGTAAGAGCGTCGCCGATGACACCTCCGGTGACGGCGAGAAGCTTCCCTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTCGACAGTTTATTGGCTACTGATGGGGCCTCTCTAATCGATAGTAACTTACCTAGCATGGTGACACCTGTCATGTGGCCCGAAATCCCAGTCAATGGGAACCGGCAACATTATCAACAGCAGTGGCAATTGGATGCATTCCACCAACCGCTATGGGAGAGGGAAGAAGTCAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCAAACTCAGCGTCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1107 0.5348 MDQAPGGLRGSVHDGATLESIQFNEEIQGIMAPAPAPENASSFTALLELPPTQAVELLHSPESDGARKPPNCHLSANQKPYSLNSFGSNLTFPSNAALIERAAKFSVFAGENSPPAPGEASLVPAVSGSNLDRVKNEPQETDSNPCSSSRLGCISDPAVDNNNQRTAKRKEREKKVKGSLKKSKSVADDTSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLIDSNLPSMVTPVMWPEIPVNGNRQHYQQQWQLDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSASLHSNQLKMEL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0412 368 Coils Coil 248 268 - -
Aed4g0412 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 258 IPR011598 GO:0046983
Aed4g0412 368 MobiDBLite consensus disorder prediction 140 162 - -
Aed4g0412 368 MobiDBLite consensus disorder prediction 178 194 - -
Aed4g0412 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 277 IPR036638 GO:0046983
Aed4g0412 368 MobiDBLite consensus disorder prediction 130 194 - -
Aed4g0412 368 SMART finulus 214 264 IPR011598 GO:0046983
Aed4g0412 368 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 368 IPR024097 GO:0006355
Aed4g0412 368 CDD bHLH_AtBPE_like 198 283 - -
Aed4g0412 368 Pfam Helix-loop-helix DNA-binding domain 212 259 IPR011598 GO:0046983
Aed4g0412 368 Gene3D - 205 277 IPR036638 GO:0046983
Aed4g0412 368 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0412 Aed-Chr4 2932964 2940204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0412 6 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.972 2.91e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed4g0412 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0412 - - gmx:100814124 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0412 4 2932964 2940204 Aed4g0412 4 2932964 2940204 ECH
Aed4g0412 4 2932964 2940204 Aed8g1411 8 18612048 18618633 PCT