Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0409 ATGGATTCGAATTCGCGTTACCAAGTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCACCAACACCAACCTAATCCTGGGTTGCTTCGCTTTCGCTCTGCCCCTCCTGCGAATTTCAAACAAGGCGAAGCTGCTGCTAGTAATGGGAACAACGCCTGGGAGGGTTCTGAACCACTTTTGAGATTCTTGAATTCCGGTGACACCAACACCCACGATACCACGTTGTCGCCCACCTTACGAGAATTCGTGGATAATAAGGTTTCTAATAATAGTAAACTAGCGAAGGAGTCATCATCATCATCTCAACAGGGTTATAATAGTACTTCTTCTATGTTACCCTCTCGGACAGTAACTTCAGCAGCTATGATGTTGGGTTCTATGGGAGGAATGGATCAAACTGCCAAAACCTTTCATTCCAATCTTCTCAGGCAAACTAGCTTCCCTGCTGCCCATTTCTCCAACAACATCTCCTTTCAAAACGGGTATGATGATAATATGAAAGGTGTTGGAAACTATAGTGGGGTTAATGGAAATGATGGGGAACTTAGTCTATCTATGAACAGAATGAAGAATCAAATAAGCTTCTCATCAAGAAGTTCTTCTTCTTCCTTGGGAATGTTATCACCAACCAACAAAATGACTAGCCCTGAGGATGGGAGACAGGGAGGTAGTAGCAATGGTGATGCTCGATATTATGGCCATGGATTTCCTAATTATGCTTCTTGGAATGAGACTTCGCAGACGAAAAGACAGAGAAGTAGTAATGATGAGTTACTTTCTGAGGCTCAGAATGGAGAACTGGGAAATCAAGTTCATTCGCTTTCGCATCATTTGAGTTTGCCAAGAACGTCGTCGTCGGAGATGTTTGCTATGGATAATTTGCTTCAGTTCTCGGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAGAAGCAAACTAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAACAATTCAAGACTTTGAGCGAAAAACGGTCTAAATGCAAATGTATAAACATGCGGAAGTCAGAAGCAGATCAACAATCAGACCAACTTGTTTGTATAATATTGCAACAAAGTCATGTGTCGATAGAAGGACCCTTATATATTACCCCAATTAAACGAAACTCTTCGATACCAAGTGCAATTCGCTTCAATGCGATCGTGTTCATAGCAGATCATCCAGCTAAATATGTGGATAGGGATATGTTAAGTTTGTACCATGAAGAAATTCACAGGTTCCTGAAAATTGCTAGTTTTGCTTCTTTTTTTAGTAGGCCTCCATCCACCGGTGGCGGGTATCTTGTTGATCTCAAATTCTCTATTGCTAGTGTTTTGTTGACCTCAATATGA 1479 0.4219 MDSNSRYQVQQQQQQQQQQQQHQHQPNPGLLRFRSAPPANFKQGEAAASNGNNAWEGSEPLLRFLNSGDTNTHDTTLSPTLREFVDNKVSNNSKLAKESSSSSQQGYNSTSSMLPSRTVTSAAMMLGSMGGMDQTAKTFHSNLLRQTSFPAAHFSNNISFQNGYDDNMKGVGNYSGVNGNDGELSLSMNRMKNQISFSSRSSSSSLGMLSPTNKMTSPEDGRQGGSSNGDARYYGHGFPNYASWNETSQTKRQRSSNDELLSEAQNGELGNQVHSLSHHLSLPRTSSSEMFAMDNLLQFSDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKDLQKQFKTLSEKRSKCKCINMRKSEADQQSDQLVCIILQQSHVSIEGPLYITPIKRNSSIPSAIRFNAIVFIADHPAKYVDRDMLSLYHEEIHRFLKIASFASFFSRPPSTGGGYLVDLKFSIASVLLTSI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0409 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 363 IPR011598 GO:0046983
Aed4g0409 492 MobiDBLite consensus disorder prediction 195 232 - -
Aed4g0409 492 SMART finulus 319 369 IPR011598 GO:0046983
Aed4g0409 492 Pfam Helix-loop-helix DNA-binding domain 319 364 IPR011598 GO:0046983
Aed4g0409 492 MobiDBLite consensus disorder prediction 195 224 - -
Aed4g0409 492 PANTHER TRANSCRIPTION FACTOR BHLH130 80 383 - -
Aed4g0409 492 MobiDBLite consensus disorder prediction 1 28 - -
Aed4g0409 492 Coils Coil 326 346 - -
Aed4g0409 492 CDD bHLH_AtbHLH_like 318 371 IPR045239 -
Aed4g0409 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 379 IPR036638 GO:0046983
Aed4g0409 492 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 80 383 - -
Aed4g0409 492 MobiDBLite consensus disorder prediction 1 36 - -
Aed4g0409 492 Gene3D - 315 386 IPR036638 GO:0046983
Aed4g0409 492 MobiDBLite consensus disorder prediction 92 115 - -
Aed4g0409 492 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0409 Aed-Chr4 2903782 2907446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0409 22 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 42.507 2.07e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed4g0409 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0409 - - gmx:100796534 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0409 4 2903782 2907446 Aed4g0409 4 2903782 2907446 ECH
Aed4g0409 4 2903782 2907446 Aed1g1278 1 12068618 12072372 ECH
Aed4g0409 4 2903782 2907446 Aed8g1422 8 18821957 18825616 PCT