Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0401 ATGGCTGCATACGCTGCGATGAAGCCCACCAAGCCCGGTCTGGAGGAGTCCCAGGAGCAGATCCACAAGATCAGGATCACCCTTTCCTCCAAGCACGTCAAAAACCTCGAAAAGGTTTGTGCGGACCTTGTTCGCGGTGCGAAGGACAAGCGCCTCAGGGTTAAGGGACCTGTGAGGATGCCCACTAAGGTTCTTCTCATCACTACCAGGAAATCCCCTTGCGGTGAAGGTACCAACACATTCGACCGCTTTGAACTTAGGGTGCACAAGAGAGTCATTGACCTCTACAGTTCCCCAGATGTTGTTAAGCAGATTACCTCAATCACCATTGAACCTGGTGTTGAGGTTGAGGTGACCATTGCAGACGCATGA 372 0.5215 MAAYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLLITTRKSPCGEGTNTFDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0401 123 Gene3D Ribosomal protein S10 domain 7 122 IPR036838 -
Aed4g0401 123 PRINTS Ribosomal protein S10 family signature 80 94 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aed4g0401 123 PRINTS Ribosomal protein S10 family signature 58 73 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aed4g0401 123 PRINTS Ribosomal protein S10 family signature 23 36 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aed4g0401 123 SUPERFAMILY Ribosomal protein S10 23 120 IPR036838 -
Aed4g0401 123 ProSitePatterns Ribosomal protein S10 signature. 47 62 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed4g0401 123 Pfam Ribosomal protein S10p/S20e 25 119 IPR027486 -
Aed4g0401 123 PANTHER RIBOSOMAL PROTEIN S10-RELATED 3 122 - -
Aed4g0401 123 Hamap 30S ribosomal protein S10 [rpsJ]. 21 120 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aed4g0401 123 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 3 122 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aed4g0401 123 TIGRFAM uS10_euk_arch: ribosomal protein uS10 22 120 IPR005729 GO:0003735|GO:0006412|GO:0015935
Aed4g0401 123 SMART Ribosomal_S10_2 25 119 IPR027486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0401 Aed-Chr4 2871916 2873442 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0401 3 123 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 89.256 5.87e-76 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0401 K02969 - gmx:100499912 238.039