Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0398 ATGGCTTCTTCAAAGACCACCAACAACCCAACACCAACTACTACACAATTGGAACCACTCCCACCACCTCAACACCGTCATCCTCATCCTCATCATCAGTTACAACACCAACAACATCACTATCATCAACAAATTCATGACCATCAAATTTCTTTTGGAATGATGCAATCCTCTTCATCATCTACCTCTATCCCAGGAAACTACCTCAGAAGCAGCAAGGATTCCGGGGCTTATGACTTGGGTGAATTGGATCAAGCGTTTTTCCTCTACCTTGATGGACAAGCAGACCCATCTAGTGTTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCTCCAACTCTCAACATTTTCCCGTCCAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACATAGAGCTAGTTTCTCCACAAACAAGTGGATCAAAGAGACCATTAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGCTGCTTCTGCTTCTGCCCCTCAACCACCCAAACCTGTCAAGCGAGAGGGCAATCGAAAAGGTCCAACGTCTAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAACTAGAGTCGAGTAGGATTAGGCTTAACCAGCTGGAACAAGAGCTACAACGTACTAGAACTCAAGGCATGTTCTTCGGTGGTGGAGGTGCACTTTTGGGAGGAGATCAGCAAGGACTTCCTGTCCCTATGAATACCATTAGCTCGGAGGCTGCAATGTTTGACGTGGAATATGCTAGATGGCAAGAGGAGCACCACCGAATAGTGTTGGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCAGAGAACGAGCTTCGACTGTTTGTGGACAATTGTTTGGCACATTATGACCAAGTCATGAACCTTAAGAGCTTAGTGGCCAAAACTGATGTGTTCCATCTTGTTTCTGGCATGTGGAAAACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGTTTCAGACCATCTGAACTCATTAAGATAATTGTGAGTCAAATTGAGCCTCTGACGGAGCAACAAATATTGGGTATATGTGGATTGCAACAATCAACACAAGAAGCAGAAGAAGCTCTATCCCAAGGGCTCGATGCTCTGAATCAATCTCTCTCAGACACTATAACATCAGACTCTCTTAGTTATCCTCCCAATATGGCTAACTATATGGGACAGATGGCTGTAGCCATGAACAAGCTCGCCACTCTTGAAGGTTTCGTGAGACAGGGTGATAATCTGCGGCACCAAACGATTCACCGTTTGCACCAGGTCCTAACAACGCGTCAAGCAGCAAGGTGTTTTCTGGCCATAGCCGAGTACTTTCATCGTCTTCGAGCCCTCAGTTCGCTCTGGTTGGCACGCCCTCGCCAAGAATAG 1482 0.4676 MASSKTTNNPTPTTTQLEPLPPPQHRHPHPHHQLQHQQHHYHQQIHDHQISFGMMQSSSSSTSIPGNYLRSSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPLEPSMELANPRNEAASASAPQPPKPVKREGNRKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRTRTQGMFFGGGGALLGGDQQGLPVPMNTISSEAAMFDVEYARWQEEHHRIVLELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIIVSQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSDTITSDSLSYPPNMANYMGQMAVAMNKLATLEGFVRQGDNLRHQTIHRLHQVLTTRQAARCFLAIAEYFHRLRALSSLWLARPRQE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0398 493 SMART brlzneu 196 270 IPR004827 GO:0003700|GO:0006355
Aed4g0398 493 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700|GO:0006355
Aed4g0398 493 MobiDBLite consensus disorder prediction 124 150 - -
Aed4g0398 493 MobiDBLite consensus disorder prediction 96 115 - -
Aed4g0398 493 MobiDBLite consensus disorder prediction 94 203 - -
Aed4g0398 493 Pfam bZIP transcription factor 200 235 IPR004827 GO:0003700|GO:0006355
Aed4g0398 493 Gene3D - 199 248 - -
Aed4g0398 493 CDD bZIP_HBP1b-like 200 249 - -
Aed4g0398 493 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 242 IPR004827 GO:0003700|GO:0006355
Aed4g0398 493 MobiDBLite consensus disorder prediction 176 203 - -
Aed4g0398 493 Pfam Seed dormancy control 295 368 IPR025422 GO:0006351|GO:0043565
Aed4g0398 493 Coils Coil 219 246 - -
Aed4g0398 493 PANTHER TRANSCRIPTION FACTOR TGA9 85 492 - -
Aed4g0398 493 SUPERFAMILY Leucine zipper domain 200 243 IPR046347 GO:0003700|GO:0006355
Aed4g0398 493 MobiDBLite consensus disorder prediction 1 34 - -
Aed4g0398 493 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 85 492 - -
Aed4g0398 493 ProSiteProfiles DOG1 domain profile. 275 489 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0398 Aed-Chr4 2858927 2865703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0398 66 493 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 65.402 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aed4g0398 DOG1 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0398 K14431 - gmx:100815176 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0398 4 2858927 2865703 Aed4g0398 4 2858927 2865703 ECH
Aed4g0398 4 2858927 2865703 Aed8g1434 8 19059975 19062321 PCT