Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0394 ATGAGTCTCCAAAGCAACCTTTCATCTCTTTTGGTTGCCCTGGCAGCAGTTTTTGCATCTTTGTATCTCATAAATCCAACTCCACAGTTTCTCAACAACTTCACATATTTTAGTCTCACAAGATTGTCGTCATCATCTGCGCACTTGGTAAAACCTTCAACTTGGAACTTCTGGAGAGTCCATCATCATCGATCACACAAGAAACACCCTGACAGTGGCAATAGTACTGATTCTATTTGTGATGATTTTCCACCAGGAATTCCACCTCCAAATACCAATACCACTTCTTATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCGGCTGTGAACGCAGTTCCAGATTTTAGTGTCAAAAGAACCATAATATGGATAAACAGTGGCATGTACTATGAGAAGGTTTTGGTGCCCAAAACCAAACCCAACATAACATTTCAAGGACAACGCTATACTTCAACTGCAATTGCATGGAATGATACTGCATTGTCTGCTAATGGAACATTTTATAGTGGCTCTGTACAAGTTTTCGCCTCCAATTTCATCGCTAAGAACATAAGCTTCATGAATTTAGCACCAATGCCAAGTCCTGGGGCCGTAGGGGCACAAGCAGTAGCTATTAGAGTATCGGGTGATCAATCTGAATTTAGGGGTTGTGGATTCTTTGGAGCCCAAGACACTCTTCACGATGATAAGGGTCTTACAGCTCATGGTAGAGTTTCGGGGGATGAAAACACAGGTTATGCATTTGTGAACAGTACAATTGGAGGAAATGGCAGAATATGGTTGGGTCGTGCATGGAGACCTTATTCTCGTGTTGTCTTTGCCTTCTCAATTATGTCTGATATCATTGCCCCGGAAGGTTGGAATGATTTCAACGACCCTTTAAGAGATCAGACTATCTTCTATGGAGAATACAATTGCTCAGGGCCAGGGGCTAGTACCAACTTGAGGGCACCTTATGTACAGAAATTAAATGAAACACAAGCTCTGAGATTCCTCAACATAAGTTTTATTGATGGTGACCAATGGTTGGAAACTTCCAATTAA 1062 0.4143 MSLQSNLSSLLVALAAVFASLYLINPTPQFLNNFTYFSLTRLSSSSAHLVKPSTWNFWRVHHHRSHKKHPDSGNSTDSICDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRTIIWINSGMYYEKVLVPKTKPNITFQGQRYTSTAIAWNDTALSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGAVGAQAVAIRVSGDQSEFRGCGFFGAQDTLHDDKGLTAHGRVSGDENTGYAFVNSTIGGNGRIWLGRAWRPYSRVVFAFSIMSDIIAPEGWNDFNDPLRDQTIFYGEYNCSGPGASTNLRAPYVQKLNETQALRFLNISFIDGDQWLETSN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0394 353 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 238 351 - -
Aed4g0394 353 Gene3D - 236 353 IPR012334 -
Aed4g0394 353 Gene3D - 91 235 IPR012334 -
Aed4g0394 353 SUPERFAMILY Pectin lyase-like 97 350 IPR011050 -
Aed4g0394 353 Pfam Pectinesterase 100 233 IPR000070 GO:0030599|GO:0042545
Aed4g0394 353 Pfam Pectinesterase 237 346 IPR000070 GO:0030599|GO:0042545
Aed4g0394 353 PANTHER PECTINESTERASE 8-RELATED 238 351 - -
Aed4g0394 353 PANTHER PECTINESTERASE 8-RELATED 6 237 - -
Aed4g0394 353 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0394 Aed-Chr4 2821522 2823415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0394 78 353 Carbohydrate Esterase AT1G05310 63.354 6.46e-150 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0394 - - gmx:100806629 619.772