Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0391 ATGATTTGCGACTTCCTCTCTGTGCATCTCAACCTTGTTCTCTTCTTGTCATTTTTGATTTCTCAGAGCTTGGCGCTCACGCATCCACCTGAAGTGTTAGCTCTTCAGGATCTATACAGGACCTTTAACTACGCACCGATGCTCGAAGGATGGAATGGTAGCGATCCTTGTGGGGAGTCTTGGGCAGGAGTTGCTTGTTCTGGACCATCAGTCATACAGCTAAGACTTCAAGGATTAAACCTCACTGGGTATCTTGGAAGTCTGCTATGTAATCTACGTAACTTGAAGCAGCTTGATGTCAGTTCGAATAACATCGAGGGTGAAATACCATTCGGTTTACCCCTCAATGTCATACATATGAATTTAAGCCACAATTTCTTACATGGACCCATTGGTGATGTATTTACTGGTTTAGATAATCTCAAAGAAATGGACCTTTCACACAATAATTTCTCAGGAGATCTGCCGTGCTCATTTGGTTCCTTAAGAAACCTTGCCAGATTGTTCATGCAGAATAACAGATTCACTGGATCAGTCGCTTACTTGGCTGAACTTCCACTAACAGATTTGATTGGAGAGAATAAATTCTCTGTGAAGGACGACTCTCCTCCCTGGAGTTTTCCTCTGGATACTGTATCAGTTGAGCATAACACTAGTAGCCCACCCACAACTCAGCCAAATGCCATAAATAACTACCCTCCCAGAGTAAGTGAGGCTCCTCCCAGAGTAAACGAGGCTCCTCTCAGAGTAAGTGAGCACAAGAAGAAGCGTATAGGTCCTGGGGGAATAGCATGTATGATTGGTGGAGGAACACTGATAGCTTCAGGGGTGGCGCTCTTTGTTGCAACCCGTTTGAATAAACATCGTGTAGAGAGCCCGAACTTGAAGAGCTCAGAAAGCAATCATGGCTCATTGCATTCTCATCCGACTAGTGCAACCATAGGGATCTCTTCTACCGCACTAGTGGAGAGGCAGAGCCCACAAATCTCCCCCTTTAATTCTGCATCCCTTTTGGGTCCTGTGGGATTGCCTTTCCCGAACCACAGCAATACAGAGGAACAATTAAGAAGAAGTTTTTCCAAAAGAAGATTCACTGGAAGGACGAAAATTTACACAGTAGAGGAGCTTCAGTTGGCTACTAATTGCTTCAATGAAGCCAACGTTCTTGGAGAGGGATCCCTTGGCCCTGTTTATAGCGCTAAATTTCCGGATGGCAAAATTTTGGCCGTGAAGAAGGTAAACATGGCGGGCATGTCTTTCAGGGAAGAGGAAAACTATTTGCACTCAACGTTTTGCCCTCCAGTGGCACACGGAAACTTGAAGGCTGCCAATGTTCTACTGGATGAAAATTCAATAGCCAGGCCAAGGGAGGAGCAATATCTGGTGAAATGGGCTCCACCTATGCTTCCTTATAGAGCGAGTTTGGAACAGCTGGTAGATCCTCGTATGAAAAGAACATTTTCATCCAAGGCTCTCTCTCGTTATGCTGATATCATCTCCCTCTGCATACAGCCTGTAAGGCAACTCCATACTCCAATGTCCGAAGTTGTGGAGTCTCTTGAATCTTTATACCAAAAGTTCAACTTTGAAAAGAGCGATGTAGCAGACGGTACTGAAGTGGATCCATTTGAGAGGTCTTTCCATGCAACCAACATATGCTTTATGGGTTCTCCAGTGGCAGTGAGCCATGCATCAGCCTGA 1701 0.4509 MICDFLSVHLNLVLFLSFLISQSLALTHPPEVLALQDLYRTFNYAPMLEGWNGSDPCGESWAGVACSGPSVIQLRLQGLNLTGYLGSLLCNLRNLKQLDVSSNNIEGEIPFGLPLNVIHMNLSHNFLHGPIGDVFTGLDNLKEMDLSHNNFSGDLPCSFGSLRNLARLFMQNNRFTGSVAYLAELPLTDLIGENKFSVKDDSPPWSFPLDTVSVEHNTSSPPTTQPNAINNYPPRVSEAPPRVNEAPLRVSEHKKKRIGPGGIACMIGGGTLIASGVALFVATRLNKHRVESPNLKSSESNHGSLHSHPTSATIGISSTALVERQSPQISPFNSASLLGPVGLPFPNHSNTEEQLRRSFSKRRFTGRTKIYTVEELQLATNCFNEANVLGEGSLGPVYSAKFPDGKILAVKKVNMAGMSFREEENYLHSTFCPPVAHGNLKAANVLLDENSIARPREEQYLVKWAPPMLPYRASLEQLVDPRMKRTFSSKALSRYADIISLCIQPVRQLHTPMSEVVESLESLYQKFNFEKSDVADGTEVDPFERSFHATNICFMGSPVAVSHASA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0391 566 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Aed4g0391 566 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 425 450 - -
Aed4g0391 566 Pfam Leucine rich repeat 120 175 IPR001611 GO:0005515
Aed4g0391 566 Gene3D Transferase(Phosphotransferase) domain 1 451 541 - -
Aed4g0391 566 SUPERFAMILY Protein kinase-like (PK-like) 360 452 IPR011009 -
Aed4g0391 566 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 453 566 - -
Aed4g0391 566 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 189 427 - -
Aed4g0391 566 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 2 177 - -
Aed4g0391 566 MobiDBLite consensus disorder prediction 296 311 - -
Aed4g0391 566 Gene3D Ribonuclease Inhibitor 26 234 IPR032675 -
Aed4g0391 566 ProSiteProfiles Protein kinase domain profile. 383 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0391 566 MobiDBLite consensus disorder prediction 292 311 - -
Aed4g0391 566 SUPERFAMILY L domain-like 45 185 - -
Aed4g0391 566 PANTHER OS01G0253100 PROTEIN 453 566 IPR045271 GO:0004714|GO:0006468
Aed4g0391 566 PANTHER OS01G0253100 PROTEIN 2 177 IPR045271 GO:0004714|GO:0006468
Aed4g0391 566 PANTHER OS01G0253100 PROTEIN 425 450 IPR045271 GO:0004714|GO:0006468
Aed4g0391 566 PANTHER OS01G0253100 PROTEIN 189 427 IPR045271 GO:0004714|GO:0006468
Aed4g0391 566 Gene3D Phosphorylase Kinase; domain 1 346 441 - -
Aed4g0391 566 MobiDBLite consensus disorder prediction 213 232 - -
Aed4g0391 566 MobiDBLite consensus disorder prediction 213 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0391 Aed-Chr4 2791641 2796223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0391 453 559 Strubbelig Receptor Gene Family AT5G06820 51.852 7.81e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0391 - - gmx:100775254 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0391 4 2791641 2796223 Aed4g0391 4 2791641 2796223 ECH
Aed4g0391 4 2791641 2796223 Aed8g1439 8 19139191 19144703 PCT