Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0390 ATGGCTTCAGACGCGAAACTCACCTCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTCTTGCTACTCCAGCCACCTCTCTTGCTTCTTCTGCTTCTGCTACTGCTGCTGCTGTTACTGTTACTTCTTCTTCTTCTTCCTCCTCTTCTTCGAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAACCTCCAAGGTGTCAAGTTGAAGGGTGCAAACTAGATCTGAGTGATGCAAAAGCTTACTATTCTAGGCACAAGGTCTGTGGAATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGACTTCAACAAAGGTTTTGTCAACAGTGTAGCAGTTGTGATTTGGCTGATTGTGCTCGTTGTACTTTGCTTTTTCCTCCTAGCTTAGCTTTAAGTGCTTATCTGAACGGTTGTCTTATAACGCGTGTGAAATACTACTATTGTTTTCCTTTTCAGCGAATTGATTCTTGCACCTCCAGGTTTCATCAACTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAACGAACGTAGGAGAAAGCCGCCACCCAGCTCCCTCTTAACCTCTCGCTATGCCAGACTTTCTTCATCTGCTTTTGATAATAGTGGCAGAGGTGGCAACTTTCTGATGGATTTGGCTTCATACCCAAAGCTTAGTCTGAGAAATTCACTTCCAACTCCAAGATCATCCGAGCTAGCTCATGGAAATCAAACATCCACACTTAGCTGGCATGGCAACTCAGAGACATCATCATCTGACCTTTTCTTGCAAGGTTCGGTGGGCGGGACAAGCTTTGCCGGTCCCGGACACCACCCTCCAGGGGAAAGTTACACTGGGGTCACTGACTTGAGCTGTGCTCTCTCTCTTCTGTCAAATCAAGCATGGGGTTCTAGAAACGCAGCACCAAGTCTTGGGTTGAGTAACATGATAAATTTCAACGAGACACCCACGACGACGCAACAACTTGCTGCTTCATCATCTCATGGTGCATCATCAATCCATCAACAACTTCCAAATACCTCATGGTGTTTCAAGAGCATTGATTCTGGTAACTGTTCACCTGACGTGGTCCCCGATCTAGGCCTGGGCCAGATTTCACAGCCTCTCAATAGCAGCCAACTTCATGGTGAGCTGGGCCTATCCCAACAGGGCAGGAGGCATTATATGGATCTAGAACAGTCCAGGGCATATGAATCTGCTCATTGGTCACTTTAA 1263 0.4671 MASDAKLTSSESLNGLKFGQKIYFEDVGLATPATSLASSASATAAAVTVTSSSSSSSSSRKGRGGSVQPAQPPRCQVEGCKLDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSSCDLADCARCTLLFPPSLALSAYLNGCLITRVKYYYCFPFQRIDSCTSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNSGRGGNFLMDLASYPKLSLRNSLPTPRSSELAHGNQTSTLSWHGNSETSSSDLFLQGSVGGTSFAGPGHHPPGESYTGVTDLSCALSLLSNQAWGSRNAAPSLGLSNMINFNETPTTTQQLAASSSHGASSIHQQLPNTSWCFKSIDSGNCSPDVVPDLGLGQISQPLNSSQLHGELGLSQQGRRHYMDLEQSRAYESAHWSL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0390 420 MobiDBLite consensus disorder prediction 50 65 - -
Aed4g0390 420 Gene3D - 65 184 IPR036893 GO:0003677|GO:0005634
Aed4g0390 420 Pfam SBP domain 75 121 IPR004333 GO:0003677
Aed4g0390 420 Pfam SBP domain 168 196 IPR004333 GO:0003677
Aed4g0390 420 MobiDBLite consensus disorder prediction 240 260 - -
Aed4g0390 420 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 161 420 - -
Aed4g0390 420 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 2 121 - -
Aed4g0390 420 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 161 420 IPR044817 GO:0003677
Aed4g0390 420 MobiDBLite consensus disorder prediction 50 72 - -
Aed4g0390 420 ProSiteProfiles Zinc finger SBP-type profile. 72 197 IPR004333 GO:0003677
Aed4g0390 420 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 121 IPR044817 GO:0003677
Aed4g0390 420 SUPERFAMILY SBT domain 73 121 IPR036893 GO:0003677|GO:0005634
Aed4g0390 420 SUPERFAMILY SBT domain 167 202 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0390 Aed-Chr4 2785344 2789358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0390 16 420 SBP-box Gene Family AT2G42200 37.698 6.47e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed4g0390 SBP 4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0390 - - gmx:100780949 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0390 4 2785344 2789358 Aed8g1445 8 19193582 19198130 PCT