Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0387 ATGGAGGATTTGAAGAAGAGGAAGCTGGAGCTGGACGCTGGCAACGGTGATTTTTCTTCCAAGGAAGAGCTTCGCTTCCTCATTGAACCTCTTGCTAAACCCCAGCTCGTCGATCTTCTAGCTAAACTAGGGTCACAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGAGCTGTGATCTATGATAAAGTGACAGGAAAATCCCGTGGCTATGGATTTATCACTTTCAAAAATATGGAATCAACTCAGCAAGCTTTGAGTGCCCCTAGCAAGTTAATCGATGGAAGATTAGCTGTCTGTAATCTAGCTTGTGAGGGTCTAAGCGGAACAAGTAGTACTCCTGATCTTTCCCTGAGGAAGCTATATATTGGAAGCTTATCACCAGAAGTCACAAGTGAAATGCTCCTTAACTATTTTGTGAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCGTATGACAGGGATACAAATGAATCACGTGGTTTTGGCTTTGTCACGTATAAGACTGCGGAGGCTGCAAAGAAGGCCATAGATGACCTAGAAAAGACACTTGGGGGAAGGAATATAATTGTAAAGTATGCTGATCCCCACAAAGGTAAACCTGGCCAGCCGCCGTTTCCTGGTGGAGTGGTTCCAATGGCAGCCTTACCTATGAACCCAGGATATATGCAGCCTGGAAAAGCCCATGCTAGTTCAGGTCCCCCAATGAATTACAGTTACTCCCAAACTGTAGCACCATATTCTGCATCTCCTTATCAAAACCTTCCTTCCACTGCACCTTCTCCTTATCCATCACAAGGGCAGATTCCTTATCCCCCAGTTTCTGCAAAGAAAGACCAACAACATGGGTTTCCTCCTACTCAATCTGTAGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1020 0.4431 MEDLKKRKLELDAGNGDFSSKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALSAPSKLIDGRLAVCNLACEGLSGTSSTPDLSLRKLYIGSLSPEVTSEMLLNYFVRHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDLEKTLGGRNIIVKYADPHKGKPGQPPFPGGVVPMAALPMNPGYMQPGKAHASSGPPMNYSYSQTVAPYSASPYQNLPSTAPSPYPSQGQIPYPPVSAKKDQQHGFPPTQSVGMNNYPYYYPKQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0387 339 MobiDBLite consensus disorder prediction 318 332 - -
Aed4g0387 339 CDD RRM_RBM24_RBM38_like 65 140 - -
Aed4g0387 339 Gene3D - 56 142 IPR012677 -
Aed4g0387 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 133 IPR000504 GO:0003723
Aed4g0387 339 SMART rrm1_1 157 229 IPR000504 GO:0003723
Aed4g0387 339 SMART rrm1_1 66 138 IPR000504 GO:0003723
Aed4g0387 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 133 IPR000504 GO:0003723
Aed4g0387 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 224 IPR000504 GO:0003723
Aed4g0387 339 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 16 339 - -
Aed4g0387 339 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 16 339 - -
Aed4g0387 339 MobiDBLite consensus disorder prediction 288 339 - -
Aed4g0387 339 SUPERFAMILY RNA-binding domain, RBD 60 142 IPR035979 GO:0003676
Aed4g0387 339 SUPERFAMILY RNA-binding domain, RBD 151 248 IPR035979 GO:0003676
Aed4g0387 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 233 IPR000504 GO:0003723
Aed4g0387 339 Gene3D - 143 241 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0387 Aed-Chr4 2765855 2769460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0387 148 293 C2H2 Transcription Factor Family AT2G19380 29.412 1.43e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0387 K12741 - gmx:100776344 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0387 4 2765855 2769460 Aed4g0387 4 2765855 2769460 ECH