Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0384 ATGAACGAAAACAAAATTGATTGGGGAGGATTGATTCATCAAAGTCATGGACTAAGTGGAGATTTTAATTCTGAATTTAGCAATCGTTATTGCCAATATTTTGATATCAGACAGGCTTGGAATATGATTGGAGGAGAAGCCACAGATCAGTCACAAAAGATAGGCCATGTGAAATCATCTGGCACCATTATGAGCCGTTTGGAGTCACCAGCTTCAGCCTTTTATGCTGCAGAAAACTGCATGGGGTTTGCAGAATATGATTGCCAAGTTGGTATTCACTCTTTGAGCTCTCAGTTATGTAAGATTGATGATTTGGAGTTCCCTTTGTATCAATCTCCAAGGGAAAACCTTTTCTTGGATTCAGCAAGCCAACCTGACCCCAACTTTGACTTGTCAAACACTTTGCAATCCATAGTGAAATCTCAACTGAATAGTGCTAATAAAATTTCATGTGGGAATTTTCCTAGTTCCGGGTTCCTTCCTTTTGAACAACAGAAGTTGTTCATTGATGGTCTTATCAGGGGCTCATCATTTCCTAACAAAGGAAATCAAGACGACCATATGGTTTCTCGTGGATCTTTCAATTTATCTGTTCCACAGCTGAGATTCTCTTCTCAGATTGAGAAGTTGTCTCCAACTTTTTCATCTATTGGAAACTCTGCTTCTAATGGGGCAGTGGTTTCAAGTAAAACACGTATTAGATGGACTAAGGATCTGCATGAAAAGTTTGTAGAGTGTGTGAATCGCCTTGGAGGCTCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGGACACAGATGGTTTGACTATCTTCCATGTCAAAAGCCATTTACAGAAATATAGAATTGCCAAATTCATTCCAGAGCCCGGTTCTGGGAAATCTGACAAAAGAACCCACACAAAGGATGTGCATCATCTAGATGCCAAAACTGGCTTACAAATTAGAGAGGCACTTAAGCTGCAATTAGATGCTCAAAGGTGTCTTCATGAACAATTAGAGATTCAGAGAAAATTACAGTTGCGAATTGAGGAACAAGGAAGGCAACTGAAAAAAATGTTTGATCAGCAGCAAAAGACTAGTAATAATAATAACCTCTCGAATACTCTGAATTCAGCCACTGATGAGACAACAATTAGTCATAAAGATGGTGAGGTTTCTGTTTCTGAAGTGGCCAACAATTCCTTCTTCCCTTCAAAGACCCCTCCAAGTCCATAA 1221 0.3939 MNENKIDWGGLIHQSHGLSGDFNSEFSNRYCQYFDIRQAWNMIGGEATDQSQKIGHVKSSGTIMSRLESPASAFYAAENCMGFAEYDCQVGIHSLSSQLCKIDDLEFPLYQSPRENLFLDSASQPDPNFDLSNTLQSIVKSQLNSANKISCGNFPSSGFLPFEQQKLFIDGLIRGSSFPNKGNQDDHMVSRGSFNLSVPQLRFSSQIEKLSPTFSSIGNSASNGAVVSSKTRIRWTKDLHEKFVECVNRLGGSEQATPKAILKMMDTDGLTIFHVKSHLQKYRIAKFIPEPGSGKSDKRTHTKDVHHLDAKTGLQIREALKLQLDAQRCLHEQLEIQRKLQLRIEEQGRQLKKMFDQQQKTSNNNNLSNTLNSATDETTISHKDGEVSVSEVANNSFFPSKTPPSP 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0384 406 Pfam Myb-like DNA-binding domain 234 283 IPR001005 -
Aed4g0384 406 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 39 404 - -
Aed4g0384 406 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 39 404 IPR044848 GO:0003700
Aed4g0384 406 Coils Coil 317 337 - -
Aed4g0384 406 Pfam MYB-CC type transfactor, LHEQLE motif 314 361 IPR025756 -
Aed4g0384 406 SUPERFAMILY Homeodomain-like 228 284 IPR009057 -
Aed4g0384 406 MobiDBLite consensus disorder prediction 355 406 - -
Aed4g0384 406 Gene3D - 229 288 - -
Aed4g0384 406 MobiDBLite consensus disorder prediction 355 378 - -
Aed4g0384 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 287 IPR017930 -
Aed4g0384 406 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 230 285 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0384 Aed-Chr4 2756776 2760131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0384 217 384 G2-like Transcription Factor Family AT4G28610 50.588 7.83e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed4g0384 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0384 - - gmx:100527257 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0384 4 2756776 2760131 Aed4g0384 4 2756776 2760131 ECH