Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0378 ATGGATATCCGCAAGAGGGGAAGACCCGAACACGGCTTCAGCTTAAATGGAGGATTCAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCAGTTGCCCATATGATGAATCTAACACCCGCAGCACCACCACCACCGAGAAATGTTGTGCCCATGCCTCCTGTACCCAATGGGTCTGCACCAACTGCCGTAAAGACCCGCATATGCAACAAGTTCAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCATTTTGCTCCATCATTTGATGACCATCACCCCATGGGACCACCCTCTGGAGCAGGTCGTCTTGCTGGTAGAATGGACCATCCTCCTGGGCCTGCCGCAAGTTTTGGTGCCAATGCCACGGCCAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGTGTGAACTCGAAGCAAATCTGCCGCCAAACTGGAGCCAAACTTTCAATCCGAGAGCATGAATCTGACCCGAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAGCAAATCAAGGAAGCAAGTAACATGGTAAAGGATTTACTTTTGACCCTGCAAATGTCTGCACCTCCTAAAACAGCCCCAGGTGCTCCCGGCGGAGCTGCCCCTCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTGCAAAGGGATCCTGCACGTTTGGAGAAAGATGTCACTTTGCACATGGAGCTTCTGAATTGCGTAAATGA 882 0.4875 MDIRKRGRPEHGFSLNGGFKKSKQEMESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPPPPRNVVPMPPVPNGSAPTAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHFAPSFDDHHPMGPPSGAGRLAGRMDHPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTAPGAPGGAAPHGSNFKTKLCENFAKGSCTFGERCHFAHGASELRK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0378 293 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Aed4g0378 293 Pfam KH domain 172 234 IPR004088 GO:0003723
Aed4g0378 293 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Aed4g0378 293 ProSiteProfiles Type-1 KH domain profile. 169 233 - -
Aed4g0378 293 CDD KH-I 171 234 - -
Aed4g0378 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Aed4g0378 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
Aed4g0378 293 Gene3D - 95 131 - -
Aed4g0378 293 Gene3D - 261 293 - -
Aed4g0378 293 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Aed4g0378 293 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 293 - -
Aed4g0378 293 Gene3D K Homology domain, type 1 165 260 IPR036612 GO:0003723
Aed4g0378 293 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
Aed4g0378 293 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 293 - -
Aed4g0378 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 241 IPR036612 GO:0003723
Aed4g0378 293 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Aed4g0378 293 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Aed4g0378 293 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Aed4g0378 293 SUPERFAMILY CCCH zinc finger 261 292 IPR036855 GO:0046872
Aed4g0378 293 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Aed4g0378 293 SMART kh_6 168 238 IPR004087 GO:0003676
Aed4g0378 293 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0378 Aed-Chr4 2719716 2724598 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed4g0378 KH_1 3.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0378 - - gmx:100803981 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0378 4 2719716 2724598 Aed8g1456 8 19462992 19468437 PCT