Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0370 ATGGCCGATGGCGAGGATATTCAACCGCTCGTCTGCGACAATGGAACCGGAATGGTCAAGAAGGATGCTTACGTTGGGGATGAGGCTCAATCTAAGAGGGGTATTTTGACTCTCAAATACCCAATTGAGCATGGAATTGTGAGCAATTGGGACGACATGGAGAAGATCTGGCATCACACGTTCTACAACGAGCTTCGTGTGGCTCCTGAAGAACACCCTGTGCTTCTCACCGAGGCACCGCTTAATCCTAAGGCCAATCGTGAAAAAATGACTCAGATCATGTTTGAGACCTTCAACACTCCTGCTATGTATGTTGCCATCCAGGCCGTGCTTTCCCTTTATGCTAGTGGCCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTGAGTCACACGGTTCCTATCTATGAAGGTTATGCTCTCCCACATGCAATCCTGCGTTTGGACCTTGCAGGGCGTGATCTCACCGATGCCCTGATGAAAATCTTGACAGAGCGCGGGTACACTTTCACCACATCTGCGGAGCGGGAAATTGTGAGAGACATGAAGGAGAAACTGGCCTACATTGCACTTGATTATGAGCAGGAGTTGGAAACTTCCAAGACCAGTTCATCTGTTGAGAAGAGCTACGAGCTACCCGACGGGCAGGTGATCACAATTGGCGCCGAAAGATTCCGGTGCCCTGAAGTTCTGTTCCAGCCATCCATGATTGGAATGGAATCTTCCGGCATTCACGAGACAACATATAACTCTATCATGAAGTGCGATGTCGACATTAGGAAGGATCTCTATGGTAACATTGTCTTGAGTGGTGGTTCCACAATGTTCCCTGGCATTGCTGATAGGATGAGCAAGGAGATTACAGCATTGGCACCAAGTAGCATGAAAATTAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCCATCTTGGCTTCCCTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGACCATCAATCGTACACAGGAAATGCTTCTAA 1041 0.4822 MADGEDIQPLVCDNGTGMVKKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYTFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESSGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0370 346 ProSitePatterns Actins and actin-related proteins signature. 75 87 IPR020902 -
Aed4g0370 346 ProSitePatterns Actins signature 1. 24 34 IPR004001 -
Aed4g0370 346 Gene3D Actin; Chain A, domain 4 151 242 - -
Aed4g0370 346 PANTHER ACTIN 17 345 IPR004000 -
Aed4g0370 346 CDD NBD_sugar-kinase_HSP70_actin 10 152 - -
Aed4g0370 346 ProSitePatterns Actins signature 2. 327 335 IPR004001 -
Aed4g0370 346 SUPERFAMILY Actin-like ATPase domain 6 124 IPR043129 -
Aed4g0370 346 Gene3D - 4 340 - -
Aed4g0370 346 Pfam Actin 13 346 IPR004000 -
Aed4g0370 346 SUPERFAMILY Actin-like ATPase domain 118 346 IPR043129 -
Aed4g0370 346 Gene3D - 109 309 - -
Aed4g0370 346 PRINTS Actin signature 86 99 IPR004000 -
Aed4g0370 346 PRINTS Actin signature 32 54 IPR004000 -
Aed4g0370 346 PRINTS Actin signature 111 130 IPR004000 -
Aed4g0370 346 PRINTS Actin signature 207 223 IPR004000 -
Aed4g0370 346 PRINTS Actin signature 20 31 IPR004000 -
Aed4g0370 346 PANTHER ACTIN-97 17 345 - -
Aed4g0370 346 SMART actin_3 7 346 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0370 Aed-Chr4 2686575 2690102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0370 1 346 Cytoskeleton Gene Families AT3G12110 88.594 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0370 K10355 - gmx:100807341 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0370 4 2686575 2690102 Aed4g0370 4 2686575 2690102 ECH
Aed4g0370 4 2686575 2690102 Aed8g1465 8 19612716 19616087 PCT