Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0362 ATGGAGGAGGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGCCCAGACCCAGAGCCCGAAACTGGGCCCATAAGCAATGAAGCTGTGAACTTGGACGATTGGATAGAAGAGCCTCTTCTGAGAATTAGCGACGCTATGAGTATGAGGTATAGGCATAGGCAAAGGCAACGGTGGCGATGGCGCCAGCTTCCGCTCCCGCATCCTGAATTTCATGCTCACTTTCCAACTGAAGCTACGCGGCATTTCCAAATACCACCTGAGGCTCACAATATCTCCGTGGAATTGAACCAGTTTTTGGTCAATTCTGGCCATGGAAGTCCCTTGCAGGCCGGGGAAGGCAGCGTGGCGGCCGAGGAGAGAATGGAGGAGGTGCCGAAGGCGTGTGAGAATGTCAATGGTGTGGCAGAGGATGAGACATCACAGAAGAAGGATGATGTAGAAAAGGGTAGTGGCAATGATGGGGACTTTTTTGACTGTAACATCTGTTTGGACCTGTCTAGGGATCCTGTTGTAACCTGTTGTGGTCATTTGTTTTGTTGGCCATGTTTATATAGGTGGTTGCATCTGCATTCGGATGCGAAGGAATGTCCAGTTTGTAAGGGAGAGGTGACACTTAAAAGTGTTACACCAATATATGGCCGTGGGAACAATGTCCGTGGTGCTGAGGAGGATTCTGCTCTCAAGATCCCTCCCAGGCCCCAAGCAAAGAGGGTTGAGAGTCTGAGACAAACCCTCCAGAGAAACACATTGGCACTCCCTGTGGAAGAGATGATTCGCCGTCTTGGAAGCAGAATTGATGGAAGCAGAATTGATCTCACTCGTGATTTGGTTCAGCCACATGAACCGGAAGTTGCCCGTGAAACGGCAGAGAGAACTTCCACCTTGCTAAATAGGTTCCTGTCCGCCAGAGGAATGCGTAGAGAGCATCAGAATCTAGTGGCAGCGGCACCCCCAGAGGATCTAATGGGTTTGGCACAGAACAATATTAATCCTTCTGAGGCAGCAGGAGATCCCCGAAGTAGGGTGCAGTCCCATTTGCTTCGAAGAACACAATCACACAGAGCAACGCTTTCTACTCTTTCATCAGCACTGACTTCAGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCAATCCATTAAGTAGTAGGAACCAAGAACAACAACCTCCTCCTCAAGTTGACGACAGAGATTCCTTTTCAAGCATTGGTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCAAGGCGTAGACGTTTGAACTGA 1374 0.4876 MEEETSDAMNLDLNLGPDPEPETGPISNEAVNLDDWIEEPLLRISDAMSMRYRHRQRQRWRWRQLPLPHPEFHAHFPTEATRHFQIPPEAHNISVELNQFLVNSGHGSPLQAGEGSVAAEERMEEVPKACENVNGVAEDETSQKKDDVEKGSGNDGDFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNVRGAEEDSALKIPPRPQAKRVESLRQTLQRNTLALPVEEMIRRLGSRIDGSRIDLTRDLVQPHEPEVARETAERTSTLLNRFLSARGMRREHQNLVAAAPPEDLMGLAQNNINPSEAAGDPRSRVQSHLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPLSSRNQEQQPPPQVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0362 457 Pfam Zinc finger, C3HC4 type (RING finger) 161 201 - -
Aed4g0362 457 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Aed4g0362 457 PANTHER OS01G0830200 PROTEIN 13 457 - -
Aed4g0362 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 228 IPR013083 -
Aed4g0362 457 CDD RING-HC_AtRMA_like 159 203 - -
Aed4g0362 457 MobiDBLite consensus disorder prediction 1 28 - -
Aed4g0362 457 SUPERFAMILY RING/U-box 156 214 - -
Aed4g0362 457 MobiDBLite consensus disorder prediction 435 457 - -
Aed4g0362 457 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 457 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aed4g0362 457 MobiDBLite consensus disorder prediction 424 457 - -
Aed4g0362 457 MobiDBLite consensus disorder prediction 379 400 - -
Aed4g0362 457 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Aed4g0362 457 SMART ring_2 161 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0362 Aed-Chr4 2636258 2637631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0362 1 448 C3H Transcription Factor Family AT3G58030 51.852 2.42e-136 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0362 K10666 - gmx:100811099 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0362 4 2636258 2637631 Aed4g0362 4 2636258 2637631 ECH