Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0361 ATGGAGCTAGCTTTGAGCTTAGGCGACACACCCAAACCCTCAAAAAATGGTTCAATAGTGAGTAGTTTCTGCATAGCACTGGGCATTGACGACAAAAGGGGTTCTTCTTCTTCTTCAGATCCACCCCTTCAGCTCGATCTTCTTCCTTCAACACCCGTTCTTCCTACTTCTTCACACCTTCGAATTCCATGGCTCTCCGATGCACTGGGTATGGAACGTGTGCACACTTCAGAGATTCCGGTGAGGGTGGTGGTGGATGACACCGACGACGGTGCAGCATTTTCATCCCCCAACAGTGCAGTCTCATCTTTTCAGATGGATTTCTGTGTCGGAAACAGTATCAGAAAGTCTCTTGAGGCTGCCAGCGACGACGACAACGACGACGAAAACGGCTCAACGAGGAAGAAACTAAGACTCTCTAAAGAACAATCAGCTTTCCTCGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACATGCGCTGGCAAAACAGTTGAATCTCCGTCCCCGACAAGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACAGAGGTGGATTGCGAGTACTTAAAGAGATGCTGTGAGAGTCTGACAGAAGAGAATAGAAGACTACAGAAGGAACTGCAAGAACTGAGGGCTTTGAAAACATGTCAACCATTTTTCATGCAGCTTCCAGCTACCACCCTCACCATGTGTCCCTCTTGTGAACGCGTCGCCACCAACACCACCGCCGGAGCCTCAGCCACCGCCGCCACCATTAATAATAATAATAGTGCCTCTGCCCCACCCAGCAATAATAGTGTTGTTGACAAGCACAGAATATTGCACGGGCCTAACTAA 867 0.4844 MELALSLGDTPKPSKNGSIVSSFCIALGIDDKRGSSSSSDPPLQLDLLPSTPVLPTSSHLRIPWLSDALGMERVHTSEIPVRVVVDDTDDGAAFSSPNSAVSSFQMDFCVGNSIRKSLEAASDDDNDDENGSTRKKLRLSKEQSAFLEDSFKEHTTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRALKTCQPFFMQLPATTLTMCPSCERVATNTTAGASATAATINNNNSASAPPSNNSVVDKHRILHGPN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0361 288 Gene3D - 138 188 - -
Aed4g0361 288 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Aed4g0361 288 CDD homeodomain 134 191 IPR001356 GO:0003677
Aed4g0361 288 PANTHER - 30 267 - -
Aed4g0361 288 MobiDBLite consensus disorder prediction 120 139 - -
Aed4g0361 288 SMART HOX_1 132 194 IPR001356 GO:0003677
Aed4g0361 288 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Aed4g0361 288 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 30 267 - -
Aed4g0361 288 MobiDBLite consensus disorder prediction 264 288 - -
Aed4g0361 288 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Aed4g0361 288 CDD bZIP 183 222 - -
Aed4g0361 288 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Aed4g0361 288 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Aed4g0361 288 SUPERFAMILY Homeodomain-like 125 191 IPR009057 -
Aed4g0361 288 Coils Coil 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0361 Aed-Chr4 2629503 2630618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0361 121 247 Homeobox Transcription Factor Family AT4G37790 77.953 8.07e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed4g0361 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0361 K09338 - gmx:100784703 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0361 4 2629503 2630618 Aed4g0361 4 2629503 2630618 ECH
Aed4g0361 4 2629503 2630618 Aed8g1480 8 19821212 19824215 PCT