Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0312 ATGGCTACTCTCGTTCTCAGAAATTCCTCTTCCACTTCTCGTCGCCTCTTCCCTTTAACCTCTCAAATCCACTCTTCACTCTCTCGTTCCCCTCTCTCTCCTCCCCTTTTCACCAATGACTCCACTTCCTCCTCTTCTTCTTCCAGTTCCAACCCCTGGTGGAGATCCATGGCCACCTTCACCAGAACGAAACCTCACGTTAATGTCGGAACAATTGGACACGTGGATCACGGGAAGACCACACTTACTGCGGCAATCACTAAGGTGCTTGCGGATGAAGGGAAGGCCAAGGCTGTGGCCTTCGATGAAATCGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACCATTGCAACGGCACATGTGGAGTATGAGACTGTGAAAAGACATTATGCTCATGTGGACTGCCCTGGACACGCAGATTATGTTAAAAATATGATTACAGGAGCTGCCCAGATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTGTGCTTTCTAAATAAAGTTGATGCTGTCGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGATATCCCAATCATTAGAGGTTCAGCATTGTCTGCTTTACAGGGTACAAATGATGAGATTGGAAAACAGGCCATCCTAAAATTAATGGATGCTGTAGATGCATATATTCCTGACCCTGTTCGAGTACTTGACAAGCCTTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGAGGAACAGTAGCCACTGGCCGTGTTGAACAAGGGATCATTAAAGTTGGTGATGAAGTGGAGGTGTTGGGTCTAATGCAGGGTGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTAGATCAAGGACAAGCTGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAGCGTGAAGATATTCAACGTGGTCAGGTGATTGCCAAGCCTGGTTCTGTAAAAACATACAAGAAATTTGAGGCAGAGATTTACGTACTCACGAAGGACGAGGGTGGGCGACACACTGCTTTCTTCTCTAACTACAGACCTCAGTTTTACTTGAGGACTGCCGATGTCACTGGAAAAGTAGAGTTGCCCGAAAATGTTAAAATGGTTATGCCTGGAGACAACGTTACTGCTGTGTTTGAATTGATTTTAGCAGTTCCACTTGAAGCAGGTCAAAGATTTGCCTTGAGAGAAGGTGGAAGAACAGTTGGTGCAGGTGTAGTTTCAAAAGTACTAAGCTAG 1362 0.4574 MATLVLRNSSSTSRRLFPLTSQIHSSLSRSPLSPPLFTNDSTSSSSSSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNDEIGKQAILKLMDAVDAYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADVTGKVELPENVKMVMPGDNVTAVFELILAVPLEAGQRFALREGGRTVGAGVVSKVLS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0312 453 Gene3D - 56 259 IPR027417 -
Aed4g0312 453 PANTHER ELONGATION FACTOR TU-RELATED 14 452 - -
Aed4g0312 453 MobiDBLite consensus disorder prediction 24 52 - -
Aed4g0312 453 Pfam Elongation factor Tu C-terminal domain 357 451 IPR004160 -
Aed4g0312 453 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 362 452 IPR009001 -
Aed4g0312 453 TIGRFAM small_GTP: small GTP-binding protein domain 67 203 IPR005225 GO:0005525
Aed4g0312 453 Gene3D Translation factors 397 452 - -
Aed4g0312 453 PANTHER ELONGATION FACTOR TU 14 452 - -
Aed4g0312 453 Pfam Elongation factor Tu domain 2 281 352 IPR004161 GO:0005525
Aed4g0312 453 TIGRFAM EF-Tu: translation elongation factor Tu 56 452 IPR004541 GO:0003746|GO:0005525|GO:0006414
Aed4g0312 453 PRINTS GTP-binding elongation factor signature 148 159 IPR000795 GO:0003924|GO:0005525
Aed4g0312 453 PRINTS GTP-binding elongation factor signature 132 142 IPR000795 GO:0003924|GO:0005525
Aed4g0312 453 PRINTS GTP-binding elongation factor signature 68 81 IPR000795 GO:0003924|GO:0005525
Aed4g0312 453 PRINTS GTP-binding elongation factor signature 185 194 IPR000795 GO:0003924|GO:0005525
Aed4g0312 453 PRINTS GTP-binding elongation factor signature 112 120 IPR000795 GO:0003924|GO:0005525
Aed4g0312 453 CDD EFTU_II 267 356 IPR033720 -
Aed4g0312 453 Hamap Elongation factor Tu [tuf]. 55 453 IPR004541 GO:0003746|GO:0005525|GO:0006414
Aed4g0312 453 Pfam Elongation factor Tu GTP binding domain 64 257 IPR000795 GO:0003924|GO:0005525
Aed4g0312 453 SUPERFAMILY Translation proteins 262 358 IPR009000 -
Aed4g0312 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 282 IPR027417 -
Aed4g0312 453 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 64 260 IPR000795 GO:0003924|GO:0005525
Aed4g0312 453 CDD EFTU_III 359 448 - -
Aed4g0312 453 CDD EF_Tu 65 259 IPR041709 -
Aed4g0312 453 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 105 120 IPR031157 -
Aed4g0312 453 Gene3D Translation factors 263 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0312 Aed-Chr4 2271056 2275229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0312 62 451 Eukaryotic Initiation Factors Gene Family AT5G60390 29.977 1.32e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0312 K02358 - gmx:100776891 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0312 4 2271056 2275229 Aed4g0312 4 2271056 2275229 ECH