Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0301 ATGACTATGACCATGTCTAGAGTGATGTGTAGGCCAGCACAGCCAATGAAAAACGTTCCAAATTCTAATTCTTCTTCTTCCAGTGGCCAAAGCCAGATAATGAGGACAAAGGAGAAAGTGGTGTTGGTGATGGGAGCAACCGGAAGCGGCAAAACTCGACTCTCCATCGACCTAGCCACGTGTTTCCCATCAGAAATCATCAACTCCGACAAAATACAAGTGTACTCAGGCCTCGACGTTGTTACAAACAAAGCCACAAAGGAGGAACAGCGTGGGGTCCTACACCACTTGCTGGGGACACAAGACCCCAACACGGAGTTCACAGCCTCGGACTTCTGCGACATGGCCTCACGCGCCATCGACTCCATCACGCACCGCGACAAGCTTCCCATAATCGTGGGAGGCTCCAACTCCTACATAGAAGCCCTCGTCGAGAGGTACGGGCCGCGTTACGATTGGTGCTTCATCTCTATCGACGTATCAATGCCATTGCTTCACTCGCACGTGATGCGGCGCGTGGACCACATGCTAGCCTGCGGAATGGTGAGGGAGCTGAGACCGTTCTTCAGTCCTGAGGGGGACTACTCTAGAGGGATTCGGAAGGCCATCGGAGTGCCGGAGTTCGACGCGTATTTTCGGAGGGAAGAGTTTTCGAGCAGCGAGATGAAGATGAGGCTGATGCAGGATGCGGTGAGGGATGTCAAGAGGAACACGTGTGACTTGGCGCGCAAGCAACTCGGGAGGATTGATACGCTGAGGTGTGTTAAGGGGTGGAAGATTCATTGGGTTTCTGCCACTCCCGCGTTTCAGAAACGTGGCCAAGAAGCTAATGATGCGTGGAACAATGCTGTGGCGAAGCCGTGTGCTTCTCTGGTTTCTCACTTTCTCTCTAGTGCCAATGCTGCTTCTGCTGGGATACTAGTGCCAGCTCTGTTGCAACAAAAGTTATCATTTTTAAACTCTAAAATCATGAAAACTAATGATTTTCACCTCTACAGTAACCTAATACAAAAGATCCAACAGTTAAAGAATTTGGTGTGA 1041 0.5053 MTMTMSRVMCRPAQPMKNVPNSNSSSSSGQSQIMRTKEKVVLVMGATGSGKTRLSIDLATCFPSEIINSDKIQVYSGLDVVTNKATKEEQRGVLHHLLGTQDPNTEFTASDFCDMASRAIDSITHRDKLPIIVGGSNSYIEALVERYGPRYDWCFISIDVSMPLLHSHVMRRVDHMLACGMVRELRPFFSPEGDYSRGIRKAIGVPEFDAYFRREEFSSSEMKMRLMQDAVRDVKRNTCDLARKQLGRIDTLRCVKGWKIHWVSATPAFQKRGQEANDAWNNAVAKPCASLVSHFLSSANAASAGILVPALLQQKLSFLNSKIMKTNDFHLYSNLIQKIQQLKNLV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0301 346 Gene3D - 37 296 IPR027417 -
Aed4g0301 346 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Aed4g0301 346 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 29 301 - -
Aed4g0301 346 MobiDBLite consensus disorder prediction 16 33 - -
Aed4g0301 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 155 IPR027417 -
Aed4g0301 346 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 29 301 IPR039657 -
Aed4g0301 346 Pfam IPP transferase 73 147 - -
Aed4g0301 346 Pfam IPP transferase 150 246 - -
Aed4g0301 346 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0301 Aed-Chr4 2175944 2178794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0301 150 298 C2H2 Transcription Factor Family AT2G27760 30.114 2.09e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0301 K10760 - gmx:100799520 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0301 4 2175944 2178794 Aed4g0301 4 2175944 2178794 ECH
Aed4g0301 4 2175944 2178794 Aed8g0798 8 6811400 6812359 PCT