Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0300 ATGTATGGTGGCGCACAACATAACAGATCCTTAAATTCTTCTCCTTCTCCTTCGAAGATCGATTCTCCCTTTCTTCTTCTTCCAACCAAAACCCTAACCAAACCAACTTCACTCTCCTACTCTCTCTCAATCCGTTACTGCCATGAGCTATCACATGATACACGCAGAGGTTTGAAAAGAAAGCCCTCATATATGGATCGAGGGCAAGAGCGGAGACCTTACAATATGAATTCTAAACCTTATGATAGAAACGCAGTGCCTGATGGTTGGTTTGACTGCCCACCACATGGGCAAGAAATAGGATGTATAATCCCTTCAAAAGTTCCACTTGGTGAATCCTTCAATGATTACATTCCTGGTAAAAAATATACTCCCAAGCAAGCGATTCATCAACAAAGAGTCTTAGGTAGAGAACTTGGTTTGGTGATTGATCTGACAAATACTACTCGTTACTATCCTGTATCAGATTGGACAAAAGAAGGGATTGGTCATGTCAAGATAAGATGCACAGGAAAAGATGCTGTACCTGATGATGAATCTGTAAAAAAATTTTGTGATGAGGTTCTGGATTTTTGCTCCCAAAGAACAAATGCAAAGAAATATATACTTGTGCATTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCACTTTCTTGTGCGTACAGAATCTATTTCAGTCACTGAGGCGATAAATAAATTTGCTAGGGCACGTCACCCAGGAATTTACAAACAAGACTACATTGATGCCCTGTACATGTTTTATCATGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGAATTTCTGAACCTGATTTTCATGGCACAGCTGTCCCGGCTGTGGCCAATAATGGACACATTCTGGAACAGGAGAATATTGTAAGGAATGAAGTAATGACAAATGATGATGCTTTGGGAGATCCAATTCCTCCAAGCCAGCTGCGTTCAATGCAAGAAGTTTGTTACCAACTGCTCAAGATGGGCACAGGGGGAAGAGGACGTTCACAGTTTCCTGGATCGCACCCTGTTTCTCTGAACAGGGACAATCTTCAACTCTTAAGACAACGGTATTACTATGCCACATGGAAAGCTGATGGGACACGATATATGATGCTGATTACTTCCGATGGATGCTATCTGATTGACAGAAAATTTCTTTTCCAAAGGATCAATATGCGATTTCCTTGCAGATATACAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCAAATACACATAAGCAAGAGAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTTTGACAGAGCTTCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGAGCCTATCAAAGAGTACAAGTCCTTATTATAGATATGACTTGGAACCATTTAGTGTGCGGAGGAAGGGTTTTTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTATCACATTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTTTGAGGTGGGAGCTGGTGATCGTCCCTTGCTCTTTCTGTATGAACGTGGAAGGAAGAAGTTTATGGACGAGAATGTTATTTTTAAAGATGCATTGGACATTTCTTCGTATTCCGGGAAGATCATTGAATGCTACTGGGATTCTGCGGAGCATCATTGGGTCTGTATGCGGGTCAGAACAGACAAAGCCACTCCAAATGATATCAATACCTACAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGATGTGTTATTGAATGAGATCAATCAGATCATTCGCTTACCCTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGCATATGGTCTCTTCACGGCGCAAGTGA 2034 0.4105 MYGGAQHNRSLNSSPSPSKIDSPFLLLPTKTLTKPTSLSYSLSIRYCHELSHDTRRGLKRKPSYMDRGQERRPYNMNSKPYDRNAVPDGWFDCPPHGQEIGCIIPSKVPLGESFNDYIPGKKYTPKQAIHQQRVLGRELGLVIDLTNTTRYYPVSDWTKEGIGHVKIRCTGKDAVPDDESVKKFCDEVLDFCSQRTNAKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFARARHPGIYKQDYIDALYMFYHEKKPEDLVCPQTPEWKRISEPDFHGTAVPAVANNGHILEQENIVRNEVMTNDDALGDPIPPSQLRSMQEVCYQLLKMGTGGRGRSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITSDGCYLIDRKFLFQRINMRFPCRYTNGGTPERNHHYTLLDGEMIIDTDPNTHKQERRYLIYDLIAINQVSLTELPFYERWKLLEKEVIEPRNMERESLSKSTSPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFEVGAGDRPLLFLYERGRKKFMDENVIFKDALDISSYSGKIIECYWDSAEHHWVCMRVRTDKATPNDINTYRKVMRSIKDNITEDVLLNEINQIIRLPLYADRIQRDIKAHQHMVSSRRK 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0300 677 Pfam mRNA capping enzyme, C-terminal domain 569 645 IPR013846 -
Aed4g0300 677 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 275 IPR029021 -
Aed4g0300 677 Gene3D DNA ligase/mRNA capping enzyme 308 545 - -
Aed4g0300 677 CDD Adenylation_mRNA_capping 320 548 IPR001339 GO:0004484|GO:0005524|GO:0006370
Aed4g0300 677 CDD RNA_5'-triphosphatase 89 255 - -
Aed4g0300 677 Pfam Dual specificity phosphatase, catalytic domain 138 257 IPR000340 GO:0008138|GO:0016311
Aed4g0300 677 MobiDBLite consensus disorder prediction 57 79 - -
Aed4g0300 677 ProSitePatterns Tyrosine specific protein phosphatases active site. 204 214 IPR016130 GO:0016311|GO:0016791
Aed4g0300 677 MobiDBLite consensus disorder prediction 57 77 - -
Aed4g0300 677 Gene3D Protein tyrosine phosphatase superfamily 61 280 IPR029021 -
Aed4g0300 677 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 182 251 IPR000387 GO:0016311|GO:0016791
Aed4g0300 677 PANTHER MRNA-CAPPING ENZYME 49 677 - -
Aed4g0300 677 SUPERFAMILY Nucleic acid-binding proteins 550 662 IPR012340 -
Aed4g0300 677 MobiDBLite consensus disorder prediction 1 20 - -
Aed4g0300 677 Gene3D - 546 654 IPR012340 -
Aed4g0300 677 Pfam mRNA capping enzyme, catalytic domain 349 547 IPR001339 GO:0004484|GO:0005524|GO:0006370
Aed4g0300 677 PANTHER MRNA-CAPPING ENZYME-LIKE 49 677 - -
Aed4g0300 677 SMART dsp_5 119 259 IPR020422 GO:0006470|GO:0008138
Aed4g0300 677 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 325 548 - -
Aed4g0300 677 PIRSF mRNA_capping_HCE 73 677 IPR017074 GO:0004484|GO:0006370|GO:0140818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0300 Aed-Chr4 2162083 2171029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0300 11 667 Protein tyrosine phosphatase (PTP) family AT3G09100 59.581 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0300 K13917 - gmx:100778292 1205.28