Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0281 ATGGAAAACCTCCATCATGCTGCTAGAAGAAGCTTGAAGCGCAGGCTCGAAGGAGATTTAACCGAAGTCCAGATATCTACCAAGGCGCGATTCCTCACTTATAAACAACTTCGCCCAAAGATCTCTGCAAAGATTTTCGAACATGTTTCTCTCCTCAATTCCGCTCTCCCATCGGATTGCGCCACAGTTAAGACCGCCGTCCACGCCCTCTCTGTACTCGCTGAGAATGAGGATCACGTGGATACTATACTGAATTGTGGCTGTGATGTTGTCCCTGCCCTGGTGAGGCATCTTAGATTGAAAGATGCAGGGCGGAAAGATGACTGTGAGGCAGATGTGCTGAAAGATAACAGTGACGGCGGCGTTGCCAATCATGATCAGCTTGAGGTGGTCAAAGGATGTGCGCTCACCCTTGATCTTCTTGCCATTGAACAAGAGTATCAGCAACTCGTTATAGATGCTGGAGCCTTGCCCTGTCTTGTAGATTGGTTAAGGAGGCACAAGATCATTACTTTTTCTAAACTGCTTATTGATCTTCTAAGGAGCAGATCAGCTGCACGGGCCTTGCGAACTCTTGCATTTAAAAATGATGGCAATAAAAATCAGATTGTTGAATGCAATGCATTACCCACTCTTGTATTAATGCTTCAATCAGAGGATTCTGAAGTACATTATGAGGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCGCCAACTATTAAGAAAGAAGTTCTTCTAGCTGGTGCTTTACAACCCGTCATTAATTCACTTAGTTCCCGCTGTTCAGAGAGCCAGAGAGAAGCAGCCCTTTTAGTTGGTCAGTTTGCCACAACCGATTCAGATTGCAAGGTTCATATTGGCCAAAGAGGGGCCATTCCACCATTAGACTTACATAATCAAGTCGGTATTACTCAAAGTGGAGGTATAGAGCCTCTGCTCAAACTTCTTGACTCAAAGAAGGTGCCAGTCCAACAAAATGCTGTTTTTGCTCTCTATGGTCTTGCAGATAATGAGGACAATGTTGCAGACATGATTAAGGCTGATGGTTTTCAAAGACTGAAGTCTGGAAATTTCAAAAATCAACAAACTGGAGAGTGTGTAACAAAGACGTTAAAAAGATTAGAGGAAAAGACAAAAGGACGAGTGTTGAAATACCTAATACATCTTATGCGCTTTGCTGAAGAAGCAGTTCAAAGACGTGTAGCTATTGCTCTTGCTTACTTATGTTCTCCTCATGATCGTAAAACAATATTTATTGACAATAATGGATTAAAATTGCTGCTGGGTATTCTTAAATCTTCAAATTTAAAGCAGAAGAGTGATGCTTCAGCGGCACTTCACAAATTGGCTGCCAAAGCCAGTTCTTCTTTCTCTCTTTTTGACATTGCTCCTCCATCACCAACTCCCCAGATATACTTGGGCGAGGAATATGTAAACAATTCTAAACTTTCTGACGTCACATTCCTGGTTGAAGGTAAGAGTTTTTATGCACATAGAGATTGTTTACTTTCTTCCGATATATTTCGAGCAATGTTTGATGGCAGTTATAGGGAAAGGGAAGCCAAAAATATAGAGATTCCAAATATTAAATGGAATGAAATTTCTGAGGAAAATGTTCCACGACTGTACAAGATGTCAGAGGATTTCAATGCTACTTCATTAAAACATTCATGTATACTGTTTATGCTGGAGAAATTTGATAAACTGAGATCTGAACCATGGTATTGTCCTCTTGTTCGTCACATTTTACCAGACATATGCATGTTTTTCTCAACTTTACTTGTCAAGTCTCATCCAGTTGACTCATGA 1812 0.4123 MENLHHAARRSLKRRLEGDLTEVQISTKARFLTYKQLRPKISAKIFEHVSLLNSALPSDCATVKTAVHALSVLAENEDHVDTILNCGCDVVPALVRHLRLKDAGRKDDCEADVLKDNSDGGVANHDQLEVVKGCALTLDLLAIEQEYQQLVIDAGALPCLVDWLRRHKIITFSKLLIDLLRSRSAARALRTLAFKNDGNKNQIVECNALPTLVLMLQSEDSEVHYEAVGVIGNLVHSSPTIKKEVLLAGALQPVINSLSSRCSESQREAALLVGQFATTDSDCKVHIGQRGAIPPLDLHNQVGITQSGGIEPLLKLLDSKKVPVQQNAVFALYGLADNEDNVADMIKADGFQRLKSGNFKNQQTGECVTKTLKRLEEKTKGRVLKYLIHLMRFAEEAVQRRVAIALAYLCSPHDRKTIFIDNNGLKLLLGILKSSNLKQKSDASAALHKLAAKASSSFSLFDIAPPSPTPQIYLGEEYVNNSKLSDVTFLVEGKSFYAHRDCLLSSDIFRAMFDGSYREREAKNIEIPNIKWNEISEENVPRLYKMSEDFNATSLKHSCILFMLEKFDKLRSEPWYCPLVRHILPDICMFFSTLLVKSHPVDS 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0281 603 Pfam Armadillo/beta-catenin-like repeat 196 235 IPR000225 GO:0005515
Aed4g0281 603 Pfam Armadillo/beta-catenin-like repeat 306 333 IPR000225 GO:0005515
Aed4g0281 603 SUPERFAMILY POZ domain 476 565 IPR011333 -
Aed4g0281 603 Gene3D Potassium Channel Kv1.1; Chain A 475 569 IPR011333 -
Aed4g0281 603 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 182 296 - -
Aed4g0281 603 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 1 181 - -
Aed4g0281 603 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 181 IPR044282 -
Aed4g0281 603 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 534 602 IPR044282 -
Aed4g0281 603 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 534 602 - -
Aed4g0281 603 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 297 533 - -
Aed4g0281 603 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 297 533 IPR044282 -
Aed4g0281 603 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 207 249 IPR000225 GO:0005515
Aed4g0281 603 Pfam BTB/POZ domain 477 534 IPR000210 GO:0005515
Aed4g0281 603 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 308 350 IPR000225 GO:0005515
Aed4g0281 603 SUPERFAMILY ARM repeat 60 458 IPR016024 -
Aed4g0281 603 Gene3D - 38 177 IPR011989 -
Aed4g0281 603 ProSiteProfiles BTB domain profile. 485 545 IPR000210 GO:0005515
Aed4g0281 603 SMART arm_5 238 278 IPR000225 GO:0005515
Aed4g0281 603 SMART arm_5 412 452 IPR000225 GO:0005515
Aed4g0281 603 SMART arm_5 196 236 IPR000225 GO:0005515
Aed4g0281 603 SMART arm_5 144 194 IPR000225 GO:0005515
Aed4g0281 603 SMART arm_5 76 143 IPR000225 GO:0005515
Aed4g0281 603 SMART arm_5 297 337 IPR000225 GO:0005515
Aed4g0281 603 SMART arm_5 370 411 IPR000225 GO:0005515
Aed4g0281 603 Gene3D - 298 459 IPR011989 -
Aed4g0281 603 Gene3D - 178 297 IPR011989 -
Aed4g0281 603 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 182 296 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0281 Aed-Chr4 2012462 2017310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0281 169 450 U-box Gene Family AT5G67340 25.260 3.83e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aed4g0281 BTB 1.1e-07 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0281 - - gmx:100783124 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0281 4 2012462 2017310 Aed4g0281 4 2012462 2017310 ECH