Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0280 ATGGAAAACTGTGACATTGCTGGACAAAGCTTGAATCGCAAGCTCGAAGGAGACTTAATCAAACAAGCACAAACATATCCGGAGCAACCAAGATCCTTAGCTAGTGACATTCTCCAACAAGTTTCTCTCCTCAATTCCGCTCTCTGGCCAGCCTCCATTTCAGATCGTGTCACCTTTGAGAAAGCCATCCACTTCCTCTCCAATCTCACTACAAACAAGGACTATGCTAAGACCATGGTGAGTTGCGGTGCAATCCCAGCTCTAGTGAGGCATCTTCAAGGGCCAGACGATGCTGTGAAAGACGATGAAATCACCGAAGAATCTTACGAACATGAGGTGAAGGAATGGTGTGTGTCCATCCCTGGTCTTCTTGCCAGACAAGAAGAGCATCGGCAACCCATTATAGATGCTGGAGCTTTGCCTTGTCTTATAGATTTGTTAAGGAGTCACAAACCACTTTGTGGTCTTCTAAGGAGAGTAGCTTATGCAATAGCCAACCTTTGCGATGATAAAACCATAAAGACCCTTGTCAGGATGGAAGAAGGTATACCTCTTCTTGTTGAGTTGCTTGAATTCGATGACCTAATGGTACAGATAGCATCTGCAAGAGCTTGCGAAAGCTTTCATAAAAAAATCCTGTCAACAAAAAGAAGGTACATTGTACAAAGCAATGCATTACCCACTCTTGTACTAATGCTTCATTCATGGGATCCCACGATACAATACGAGGCAGTTCGTGTGATTGGAAATCTGGTCAACTCTTCGGAATATGTTCAGACAGACATTCTTCTAGCTGGGGCTTTACAACCTATTATTCGTTTACTTAGATTCAGCTTGTCAGGTGAATTAAGTCATGTTCATATTGGCCAAAGAGGGGCTATTCCTCCATTAGTTGACATGCTTAAATCTCCACATTTAAAACTTCAAGAAATGTCAGCTTTTGCACTTGGGAGGTTGGCAACAAAGAACCCACATAATCAAGCTGGTATTGCTCAGAACGGAGGTGTAGAGCCTCTTCTCAATATTCTTCTTGATCCAAATGATCAAAATGATGACCAAAATGACATGCTTCGCCGACATAAAGCTATTTATGCTCTCTTTTCACTTGCTGGGAATAAGGACATTGTTGCAGAAATTATTAAGGCTGGTGGATTTCAAAGACTGAAGGCTGGACATTTCCAATTTTTACCTACGAGACAGCAGGTAGCAATGACGTTAGAAAAATTAGAGAAAAATTCGGGAGGGCAAGTAATGAAACACTTAATATATCTTATGCGCGTTGGGGAAGAAGGGGTTCAAAGACGTGTAGCTATTGCTCTTGCTTATTTATGTCCTCCTTGTGATTGTAAAACTATATTCATTGACAATGATGGATTAAAATTTCTATTGGATGCTCTTAAATCTGAAAACATAAGTCAGAAGCGTGATGCTTCAGCGGCACTTCGCAAATTAGCCTCCATAATCAGTTCTACTACCTCTCTTTTTGACATTGCTCCTCCATCACCAACTTCCCATATGTACTTGGACGAGGACGAGGAATATGTAAACAATCCTAAACTTTCTGATGTCACCTTCCTGGTTGAAGGAAAAACTTTTTATACGCATAGAGATTGTTTACTTTCTTCAGATATATTTCGCTCAATGTTTGATGCCAGTGATATGGAAAGGGAAGCCAAAGATATAGTGATTCCATATATTAAATGGAATATATTTGAATTGATGATGAGATTTATGTACAGCGGAACCCTAGATGTGAATTGTGATATTGCTCAGGATCTCCTAAGAGCTGCAGATGAGTATCTTCTGCACGACCTTAAGCGTGTTTGTGAACATGCTATTGCTCAGAATATTTGTGTGGAAAATGTGTTGAGACTGTACAAGATGTCGGAGGATTTCAAAGCTACTACATTAAAACATGCATGCATACTGTTTATGCTGGAGAAAAATGAGGTGAACTTAGTAAATATTCAATACTTTATTATTATTATTATTACAATAATTATTATTATTATAAAATATGTTTTTAATCTATATAAAATGGTTCGAATCTAG 2052 0.3918 MENCDIAGQSLNRKLEGDLIKQAQTYPEQPRSLASDILQQVSLLNSALWPASISDRVTFEKAIHFLSNLTTNKDYAKTMVSCGAIPALVRHLQGPDDAVKDDEITEESYEHEVKEWCVSIPGLLARQEEHRQPIIDAGALPCLIDLLRSHKPLCGLLRRVAYAIANLCDDKTIKTLVRMEEGIPLLVELLEFDDLMVQIASARACESFHKKILSTKRRYIVQSNALPTLVLMLHSWDPTIQYEAVRVIGNLVNSSEYVQTDILLAGALQPIIRLLRFSLSGELSHVHIGQRGAIPPLVDMLKSPHLKLQEMSAFALGRLATKNPHNQAGIAQNGGVEPLLNILLDPNDQNDDQNDMLRRHKAIYALFSLAGNKDIVAEIIKAGGFQRLKAGHFQFLPTRQQVAMTLEKLEKNSGGQVMKHLIYLMRVGEEGVQRRVAIALAYLCPPCDCKTIFIDNDGLKFLLDALKSENISQKRDASAALRKLASIISSTTSLFDIAPPSPTSHMYLDEDEEYVNNPKLSDVTFLVEGKTFYTHRDCLLSSDIFRSMFDASDMEREAKDIVIPYIKWNIFELMMRFMYSGTLDVNCDIAQDLLRAADEYLLHDLKRVCEHAIAQNICVENVLRLYKMSEDFKATTLKHACILFMLEKNEVNLVNIQYFIIIIITIIIIIIKYVFNLYKMVRI 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0280 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 138 182 IPR000225 GO:0005515
Aed4g0280 683 ProSiteProfiles BTB domain profile. 521 587 IPR000210 GO:0005515
Aed4g0280 683 Pfam Armadillo/beta-catenin-like repeat 217 251 IPR000225 GO:0005515
Aed4g0280 683 Pfam Armadillo/beta-catenin-like repeat 128 169 IPR000225 GO:0005515
Aed4g0280 683 Gene3D Potassium Channel Kv1.1; Chain A 498 646 IPR011333 -
Aed4g0280 683 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 7 675 - -
Aed4g0280 683 Pfam BTB/POZ domain 513 616 IPR000210 GO:0005515
Aed4g0280 683 SUPERFAMILY ARM repeat 159 493 IPR016024 -
Aed4g0280 683 Gene3D - 28 99 IPR011989 -
Aed4g0280 683 Gene3D - 284 497 IPR011989 -
Aed4g0280 683 SMART BTB_4 521 617 IPR000210 GO:0005515
Aed4g0280 683 SUPERFAMILY POZ domain 505 615 IPR011333 -
Aed4g0280 683 SMART arm_5 72 126 IPR000225 GO:0005515
Aed4g0280 683 SMART arm_5 323 371 IPR000225 GO:0005515
Aed4g0280 683 SMART arm_5 127 169 IPR000225 GO:0005515
Aed4g0280 683 SMART arm_5 446 486 IPR000225 GO:0005515
Aed4g0280 683 SMART arm_5 281 321 IPR000225 GO:0005515
Aed4g0280 683 SMART arm_5 213 253 IPR000225 GO:0005515
Aed4g0280 683 SUPERFAMILY ARM repeat 55 204 IPR016024 -
Aed4g0280 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 334 IPR000225 GO:0005515
Aed4g0280 683 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 675 IPR044282 -
Aed4g0280 683 Gene3D - 100 283 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0280 Aed-Chr4 1999727 2006510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0280 286 388 U-box Gene Family AT5G40140 32.039 3.34e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aed4g0280 BTB 4.1e-20 CL0033