Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0239 ATGGAGCAGTATGAAATTCTAGAACAGATTGGAAAAGGTGCATTTGGTTCTGCCCTGCTTGTGAGGCACAAGCACGAAAAGAAAAAGTATGTCCTTAAAAAGATTCGTCTTGCTCGTCAAACTGACAGAACCCGTAGATCTGCTCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAGAAGGGTTGTTTTGTGTGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATTAAAAAGACTAATGGTGTTAACTTTGCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAATTGCTGATGGCACTTGATTACTTGCATGGAAATCATATTCTTCATCGTGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCGGTTGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCTTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGTCAGCTTTTAAAGCTTTTGACATACAATCATTGATTATCAAAATAAATAAGTGTATAGTAGCTCCCCTGCCAACTATGTATTCTGCTGCTTTTCGAGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGTTGAGGCCAACTGTAAGTTCTATCTATAGGGCTGCAGAATTACTAAACCATCCGCACCTTCAGCCTTACATTCATAAAATTCACCTAAAATTAAATAGCCCCAGAAGAAGTACTTTTCCATTCCAATGGTCCGAGTCAAATTATGTAAGGAGAACTCGGTTCGTTGAGCCAGAGTCTGTTTCTACTCTTTCTGACCTAGATAAATGCTTCTCAGTATTTAGCAACGACAGGACCTTGAATCCTAGTATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGAATATCCACTTGTTCAGAAGAGAAGATCTATGAACTATCTGTAGGTTGTGTCCGTAACAAATGCAATACTGATAAATCAAAATCCACAAAGCTCTCAACTGTTGAGAGAGCACCAAGATCAAGAGCAGTTACGGTTTCCGCCACTACCAAAAGGCAAACAATGGCACCATCAAAGACAACCCGTTCTGGTCCAAACCGTGATTCAGTTCCAGTGTCTCATGGAAAGTTTTCCACACCACCAAGAGCCAGGGCAACACCAAACTTGTACACCAATGTTGGTCTCCTTGGAAGTGTAGACTCTCTTGATGTTTCAGTTAATGCGCCACGAATTGACAAGATGGCTGAATTCCCAATGACTCTATGTGAGGATCCTTTTTTCCCTATCCGTGGACCATCATCAACATCAGCACGCTGCTCTTCTAGCTCAGCAGAGTGTGCTGCTGATTTCTCCATCACAAAGGACAAGTGTACAATCCAGGAGGACAAAGTCACTCTCCTCCCCACCAGTATCAGTGATGCTTTCCCTGGTCCAAAGGCCACTGAATTCTCCCCTGAGCATGTCAAAGCTTGTGTCTCAAGCCATTCCTCAGCAGCTGAGTTGGATCAACGCCGGTTTGACACCTCGTCATACCAGCAACGCGCGGAGGCACTGGAGGGGTTGCTGGAGTTCAGTGCCAGGCTCCTACAACAAGAGAGGTTTGATGAGCTTGGGGTGCTGCTGAAGCCATTCGGGCATGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGACCAAGAGCATTAAACAAAATGCTGTCTGA 1830 0.4317 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKTNGVNFAEEKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKSAFKAFDIQSLIIKINKCIVAPLPTMYSAAFRGLVKSMLRKNPELRPTVSSIYRAAELLNHPHLQPYIHKIHLKLNSPRRSTFPFQWSESNYVRRTRFVEPESVSTLSDLDKCFSVFSNDRTLNPSISGTEQVSQCSTQRAHGISTCSEEKIYELSVGCVRNKCNTDKSKSTKLSTVERAPRSRAVTVSATTKRQTMAPSKTTRSGPNRDSVPVSHGKFSTPPRARATPNLYTNVGLLGSVDSLDVSVNAPRIDKMAEFPMTLCEDPFFPIRGPSSTSARCSSSSAECAADFSITKDKCTIQEDKVTLLPTSISDAFPGPKATEFSPEHVKACVSSHSSAAELDQRRFDTSSYQQRAEALEGLLEFSARLLQQERFDELGVLLKPFGHEKVSPRETAIWLTKSIKQNAV 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0239 609 Gene3D Transferase(Phosphotransferase) domain 1 86 310 - -
Aed4g0239 609 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 598 - -
Aed4g0239 609 CDD STKc_Nek 3 264 - -
Aed4g0239 609 MobiDBLite consensus disorder prediction 370 426 - -
Aed4g0239 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Aed4g0239 609 MobiDBLite consensus disorder prediction 385 410 - -
Aed4g0239 609 SMART serkin_6 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0239 609 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Aed4g0239 609 SUPERFAMILY Protein kinase-like (PK-like) 1 334 IPR011009 -
Aed4g0239 609 ProSiteProfiles Protein kinase domain profile. 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0239 609 PANTHER SERINE/THREONINE-KINASE NEK4 1 598 - -
Aed4g0239 609 Pfam Protein kinase domain 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0239 609 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0239 Aed-Chr4 1716095 1724215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0239 10 295 MAP Kinase Kinase Kinase AT1G53570 28.758 2.01e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Aed4g0239 Pkinase 1.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0239 K08857 - gmx:100792678 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0239 4 1716095 1724215 Aed4g0239 4 1716095 1724215 ECH
Aed4g0239 4 1716095 1724215 Aed8g0840 8 7117108 7122303 PCT