Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0220 ATGGGGAGCTTTGAAACTGAGATGAATCTTAAGGACACAGAGTTGAGGTTGGGATTACCCGGCTGTGATGAACCTCTTCATGGATCTGTTGTTAGAAGCAACAAGAGATCTTCACCAGAACCAAGTACTGTGGAAGAGTCCTCCAGGTGCAACTCTAATGCTTCTGCAGATTCCACAACCACAAGTGATCATGACCAAGACACTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTATAGGAAGAACAGTCTGCAACAGAAGAAAGTGGAGCAGAGTGATGGAAGTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCAGCTTACCTGAGGAAGGTAGATCTAAAGGTTTACAATAGCTACCCAGAACTTCTCATGGCCTTGCAAAATTTGTTCAAGTGCACCATTGGTGAATATTCAGAGAGGGAGGGTTACAATGGATCTGAATACGCTCCTATTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTATCCTCATGCAAGAGGCTGAAAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTGTAA 597 0.4456 MGSFETEMNLKDTELRLGLPGCDEPLHGSVVRSNKRSSPEPSTVEESSRCNSNASADSTTTSDHDQDTVQPAKVQVVGWPPIRSYRKNSLQQKKVEQSDGSGMYVKVSMAGAAYLRKVDLKVYNSYPELLMALQNLFKCTIGEYSEREGYNGSEYAPIYEDKDGDWMLVGDVPWNMFVSSCKRLKIIKGSEAKGLGCL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0220 198 SUPERFAMILY CAD & PB1 domains 98 186 - -
Aed4g0220 198 MobiDBLite consensus disorder prediction 1 73 - -
Aed4g0220 198 ProSiteProfiles PB1 domain profile. 102 194 IPR000270 GO:0005515
Aed4g0220 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 196 IPR003311 GO:0005634|GO:0006355
Aed4g0220 198 MobiDBLite consensus disorder prediction 31 69 - -
Aed4g0220 198 Gene3D - 96 198 - -
Aed4g0220 198 PANTHER AUXIN-INDUCED PROTEIN 3 196 - -
Aed4g0220 198 Pfam AUX/IAA family 13 196 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0220 Aed-Chr4 1587836 1589228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0220 93 195 B3 DNA Binding Superfamily AT2G46530 36.893 2.48e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed4g0220 AUX_IAA 4.1e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0220 K14484 - gmx:100792134 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0220 4 1587836 1589228 Aed8g0871 8 7458541 7460075 PCT