Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0219 ATGGAGGTTGGCCTCAAGAAAAAGGAGAACATGGGGTTTGAAGAAACTGAGCTAAGGCTTGGACTTCCTGGAGGAAACGGCTCTGCTAATACTGAAGAAGTGCTGCTCATCAGGAAGAGAGGTTTCTCTGAGACTCAATCTGAATCTGAATCTGAAGTGGATTTGATGCTTAACCTTTCTTCTAAGGAACCAACCACTGCTGCCGCTGCTGCACCAGATCCAACTGATAAACACAACACTTTGCCTAAGGAGAAGACCCTTCTCCCTGCAGATCCTGCTAAGCCTCCAGCCAAGGCGCAGGTGGTGGGTTGGCCACCTGTGCGGTCGTATCGGAAGAACATGTTAGCTGTGCAAAAGAGTAGTGTTGTTGGAGAAGATAGCAGCAGCCCTAATGGAAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAACAGCTACCCAGACCTCTCTGATTCTTTAGGCAAAATGTTCAGCTCCTTCACCATTGGCAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAGCTGATGGATCTATTGAACAGCTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCGTGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATCATGAAAGGAAAGGAGGCTATTGGTCTTGGCCTTGCACCAAGAGCCATGGCAAAATGCAAGAACAGGAGCTAG 765 0.4745 MEVGLKKKENMGFEETELRLGLPGGNGSANTEEVLLIRKRGFSETQSESESEVDLMLNLSSKEPTTAAAAAPDPTDKHNTLPKEKTLLPADPAKPPAKAQVVGWPPVRSYRKNMLAVQKSSVVGEDSSSPNGNASFVKVSMDGAPYLRKVDLKMYNSYPDLSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0219 254 Pfam AUX/IAA family 15 241 IPR033389 -
Aed4g0219 254 SUPERFAMILY CAD & PB1 domains 127 233 - -
Aed4g0219 254 MobiDBLite consensus disorder prediction 48 65 - -
Aed4g0219 254 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 245 IPR003311 GO:0005634|GO:0006355
Aed4g0219 254 MobiDBLite consensus disorder prediction 42 101 - -
Aed4g0219 254 MobiDBLite consensus disorder prediction 1 15 - -
Aed4g0219 254 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 245 - -
Aed4g0219 254 Gene3D - 129 245 - -
Aed4g0219 254 ProSiteProfiles PB1 domain profile. 134 234 IPR000270 GO:0005515
Aed4g0219 254 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0219 Aed-Chr4 1574325 1577283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0219 135 237 B3 DNA Binding Superfamily AT3G61830 33.010 7.13e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed4g0219 AUX_IAA 2.1e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0219 K14484 - gmx:100810013 402.905