Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0208 ATGAAGATAATGGCACGAGAGCGCAAACCTGTCGGCGAAACCCCAGACTGTCTCCACCCCTATTTATATCCAAACTCATCCCCCCTCTCACTCTCACTCTCACTTCAATCCCATCTTCACCCAATGCCTGTCCACGCGCTTCCAAATCCGAACCACTCTCCACCTCCGTCGAATCCCAGACCCGGGCCCGGGCCCAAGGAGGCCCATTTCAGGGGCGTCCGCAAGCGTCCCTGGGGCCGCTTCGCCGCCGAGATCCGCGACCCCTGGAAAAAGACCAGAAAGTGGCTCGGTACCTTCGACACCGCCGAGGAAGCCGCCAGGGCCTACGACTCCGCCGCCAGGACGCTACGTGGGCCCAAGGCCAAGACCAACTTCACCTACGTCGTCGCTCCCGCTCTCCACATCCCTCCCGCCGCCGTGCTCGCTACTCCCCAAGCCCAAGCCCAAGCCCAAGAGCAACTCGCAAGACAGGTCGAGTTCTGGCCGCCACCGTTGTTCTTCGCGGCGGATGTAGCCACCGTAGTGCCGGTGAGGTCGGAGTATAAGGGCTACAAGTTGGAGAATATTGGGGGGTTTGTGGTGAGCAAGGAGGAGCGGCAAGAGAATAAGAAGAAAAAGCCGTTTTTGTTCGACCTTAACCTGCCGGCGCCGCTCTTCTGA 660 0.6015 MKIMARERKPVGETPDCLHPYLYPNSSPLSLSLSLQSHLHPMPVHALPNPNHSPPPSNPRPGPGPKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDSAARTLRGPKAKTNFTYVVAPALHIPPAAVLATPQAQAQAQEQLARQVEFWPPPLFFAADVATVVPVRSEYKGYKLENIGGFVVSKEERQENKKKKPFLFDLNLPAPLF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0208 219 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Aed4g0208 219 MobiDBLite consensus disorder prediction 42 73 - -
Aed4g0208 219 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Aed4g0208 219 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Aed4g0208 219 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Aed4g0208 219 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Aed4g0208 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 66 156 - -
Aed4g0208 219 CDD AP2 68 128 IPR001471 GO:0003700|GO:0006355
Aed4g0208 219 SUPERFAMILY DNA-binding domain 69 127 IPR016177 GO:0003677
Aed4g0208 219 MobiDBLite consensus disorder prediction 47 63 - -
Aed4g0208 219 Pfam AP2 domain 69 118 IPR001471 GO:0003700|GO:0006355
Aed4g0208 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 66 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0208 Aed-Chr4 1521896 1522555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0208 66 125 AP2-EREBP Transcription Factor Family AT1G50640 90.000 5.47e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed4g0208 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0208 K09286 - gmx:100816599 248.825