Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0196 ATGGAAGGAAACTATGTGACCAGAAACACGCATAATAAAGGGTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGTCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCTTGCTTACCCTCGTCATCATGGGTTTCAGAGTCTCCTAAACCTAACCCTAATAGCCTTAAGCCTAACCCAACTCATCTTTCACCCTCCTCTCCATCATCATCATGCCTATCTAATAATAACCTTTTGAATTGTGCTCATAGTACTTCTCCACTTTATAGCCCTTCTTTGACTTTGTCTGCATCTTCTTCACAGACCCCAGCTTCTCCTAGTGGAGACAAGAAACCAAGAGTCTCATCTTCACATCTTCTTCCTCTTTTGGTTCCTCAAAGCAGTGAGGAAATTAAGATGATGAGTAGGAACAAAGGGAGTGGTTTAGGAGTTGAAGAAGTACAGGGATGTGCAATAGGGGAGGAACTCAAGGTTTTCAAGAGTAGTACTAGTAGTGAGCATAACATCGAGCTGGAGTTGGGAATAGGGTTACTTAAACAACCAGAGAAGTTAGATTTGGAGCTACGATTGGGGCACTGCTAG 651 0.4347 MEGNYVTRNTHNKGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSCLPSSSWVSESPKPNPNSLKPNPTHLSPSSPSSSCLSNNNLLNCAHSTSPLYSPSLTLSASSSQTPASPSGDKKPRVSSSHLLPLLVPQSSEEIKMMSRNKGSGLGVEEVQGCAIGEELKVFKSSTSSEHNIELELGIGLLKQPEKLDLELRLGHC 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0196 216 MobiDBLite consensus disorder prediction 63 92 - -
Aed4g0196 216 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Aed4g0196 216 MobiDBLite consensus disorder prediction 115 135 - -
Aed4g0196 216 MobiDBLite consensus disorder prediction 115 140 - -
Aed4g0196 216 SUPERFAMILY beta-beta-alpha zinc fingers 26 55 IPR036236 -
Aed4g0196 216 Pfam C2H2-type zinc finger 29 53 - -
Aed4g0196 216 PANTHER OS07G0101800 PROTEIN 11 215 - -
Aed4g0196 216 SMART c2h2final6 29 51 IPR013087 -
Aed4g0196 216 Gene3D Classic Zinc Finger 10 75 - -
Aed4g0196 216 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Aed4g0196 216 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 11 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0196 Aed-Chr4 1443392 1444042 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0196 16 214 C2H2 Transcription Factor Family AT3G23130 35.909 2.13e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed4g0196 zf-C2H2_6 7.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0196 - - gmx:102660083 290.426