Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0195 ATGATATCGATCCACAGCCGGCTTGTAGAATACTTCCCTTCTCTTAGCAAACATCAAAGACTTTTCCACAAAATTGAGTACTTGACTATTGTAGAAGCTGAGTGCTACTCCAACAAGAGCTCTAGCAGCGATGATATGGGAATTGGAAGATCTTATGAGTGCATCTTTTGCAAGAGAGGTTTCACCACAGCACAAGCCTTAGGTGGACACATGAACATTCACAGAAAAGAAAGGGCCAACAAGACCAAACCCACTACTTTCTCACCTCCTTCAAACAAACTTCATGATGATGGTGGCGGCAACAACAACAACTATGCAGATCTCGGGTTGATCTATTCACAACTTCCAAGCCAATATAATTCCACTGCTCCAGCGGCTGGTGTAGATGCTAATAATAGCTACCGTGATCTTTATTTTCCTTCTACTGTTAGGCCTTCTAATTCCCATGAGGAAAACCAACGGGGTCACGTGTTTGCCCAAGATTGGAGGAAGAGAAGTTTGAGCTTGTACACTAATCCGTTGTGTTTCCATGAAATTAAAGACAAGTTTGAAGAGAGTGAAGAGAATGGCCTGGATTTGGAGCTGAGGCTTGGTCATTATCCTTAG 606 0.429 MISIHSRLVEYFPSLSKHQRLFHKIEYLTIVEAECYSNKSSSSDDMGIGRSYECIFCKRGFTTAQALGGHMNIHRKERANKTKPTTFSPPSNKLHDDGGGNNNNYADLGLIYSQLPSQYNSTAPAAGVDANNSYRDLYFPSTVRPSNSHEENQRGHVFAQDWRKRSLSLYTNPLCFHEIKDKFEESEENGLDLELRLGHYP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0195 201 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 40 201 - -
Aed4g0195 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Aed4g0195 201 PANTHER OS07G0101800 PROTEIN 40 201 - -
Aed4g0195 201 MobiDBLite consensus disorder prediction 83 99 - -
Aed4g0195 201 MobiDBLite consensus disorder prediction 79 100 - -
Aed4g0195 201 Pfam C2H2-type zinc finger 52 77 - -
Aed4g0195 201 Gene3D Classic Zinc Finger 39 96 - -
Aed4g0195 201 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Aed4g0195 201 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0195 Aed-Chr4 1433598 1434346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0195 52 83 C2H2 Transcription Factor Family AT5G43540 81.250 1.11e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed4g0195 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0195 - - gmx:102665426 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0195 4 1433598 1434346 Aed4g0195 4 1433598 1434346 ECH
Aed4g0195 4 1433598 1434346 Aed8g0897 8 7731141 7733558 PCT