Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0190 ATGGCTTCTGGTAGTGGAAGTAGTGCAGGGTCTCCTTGCGGGGCATGCAAGTTCCTGAGAAGAAAGTGTGCTGCTGACTGCATATTTGCACCATACTTTTGCTCAGAACAAGGGCCTGCTAGATTCGCAGCCATACACAAGGTCTTTGGCGCCAGCAACGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGCTGTGAAGCCGTTGTCACTATTGCTTATGAGGCTCAGGCTCGTATCAGAGACCCTGTCTATGGCTGCGTCTCTCACATTTTTGCCTTACAACAACAGGTTGCATGCTTGCAGGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACATAGAGAACAATAATCATCAGTGGCCAGCAGGGAATAATAACAATAGCAGTGTTTCAGGACAACCAATTCATCCATTTTGTACCACTTACATGAACCCTATATCTCCTCAGAGCTCTCTTGAGTCAATTGATCACAGCAGCATCATCAATGATGGAATGAGCATGCAAGACATACAAAGCAGAGAGGATTTCCAATTAATCCATGCTAAAGAAAGATCATACAACAACAATGACTTGGGGGAGCTGCAAGAACTTGCACTCAGGATGATGAGAAACTCATGA 630 0.4587 MASGSGSSAGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNIENNNHQWPAGNNNNSSVSGQPIHPFCTTYMNPISPQSSLESIDHSSIINDGMSMQDIQSREDFQLIHAKERSYNNNDLGELQELALRMMRNS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0190 209 Pfam Lateral organ boundaries (LOB) domain 12 110 IPR004883 -
Aed4g0190 209 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Aed4g0190 209 Coils Coil 92 119 - -
Aed4g0190 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 207 - -
Aed4g0190 209 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0190 Aed-Chr4 1404360 1405617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0190 2 208 AS2 family AT2G42430 53.815 1.13e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed4g0190 LOB 7.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0190 K13944 - gmx:100801508 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0190 4 1404360 1405617 Aed4g0190 4 1404360 1405617 ECH
Aed4g0190 4 1404360 1405617 Aed8g0900 8 7749407 7750585 PCT