Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0189 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGGAAATGTGTGAGAGGATGTGTTTTTGCACCTTACTTTTGCCATGAACAGGGTGCTACTCATTTTGCTGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTGTCGGTGAACGTTGTGAAGCTGCTGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGCTGTGTGGTGAATTTACAAGCACAACTAGCTTATCTGAGGGAACAAGCAGGTCAGATCTATCTCAATGCCTCTGCCACTGAAAACCCTAATGAGAAATACCTTGGAAAACCTACTAATATCCCTCAAGATCTCCAAAGTTGGTTCCTGCAGATGGAGAATTCCAACATGGCTACTTCACAATCTCTCCCTAACTTGCCCACCAATAATCCCTCAACACAGTATTATGGGAATACTAATACTCTCATGGAACCAAACCCTATTGGAAATTATGAAAATTCAGGAACCACCGTAGAAGAAAGCATCTCATTTTCTAGCTTTGAAGAGAGTTGTAACTCCATGTCCTATGACATGCAAAGGCAATGGGGGCTTTCATGA 621 0.43 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVGERCEAAVTISYEAQARLQDPIYGCVVNLQAQLAYLREQAGQIYLNASATENPNEKYLGKPTNIPQDLQSWFLQMENSNMATSQSLPNLPTNNPSTQYYGNTNTLMEPNPIGNYENSGTTVEESISFSSFEESCNSMSYDMQRQWGLS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0189 206 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Aed4g0189 206 Pfam Lateral organ boundaries (LOB) domain 7 96 IPR004883 -
Aed4g0189 206 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 200 - -
Aed4g0189 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0189 Aed-Chr4 1397119 1398418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0189 7 138 AS2 family AT3G58190 61.644 9.28e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed4g0189 LOB 8.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0189 K13945 K13944 gmx:100816960 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0189 4 1397119 1398418 Aed4g0189 4 1397119 1398418 ECH
Aed4g0189 4 1397119 1398418 Aed8g0901 8 7759177 7760216 PCT