Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0184 ATGAGTTCCCCTTCGTTTCATCAGCATTCATTGATGGAGCCTTCGGATATTTTGTTTGAATCATTTTCAAGCAAAGGTACTAATGAATACTGGGACCCTTTCCATGATTCTCTTTCCTTTGATATGATTGATGACTTAAGGGATCCACAGGAACCTGCAACAAGCCAGGTAGTGAGTGAAGAAACTAAGAAGAAGTGTTATATTGGAGTAAGGAGAAGACCATGGGGAAGATTTGCAGCAGAGATCAGAGACACGACGAGGAAAGGTACGAGGGTTTGGCTTGGAACGTTTGAGAGTGAAGAGGAAGCTGCTTTGGTTTATGACCAGGCTGCATTTACCATGAGAGGCTCAAGTGCAGTGCTGAATTTTCCAGTCAAAAGGGTAATAGAGTCTTTGCAAGAGATCAATTATATTGGTTGCGGTAGCAAAGGGTGCTCTCCTGCGTTGGAACTCAAAGAGAGGCACAACATGAGACGAAAGTTAATGTCATCAGAGGCTAAGAGTAGTAGGAAGAGGAAACTGCAGGAACCGAGTGCTGTTGTGGTGTTGGAGGATTTGGGAGCTGAATACCTGGAAGCACTTCTTAGCAATAGCATATAG 600 0.4383 MSSPSFHQHSLMEPSDILFESFSSKGTNEYWDPFHDSLSFDMIDDLRDPQEPATSQVVSEETKKKCYIGVRRRPWGRFAAEIRDTTRKGTRVWLGTFESEEEAALVYDQAAFTMRGSSAVLNFPVKRVIESLQEINYIGCGSKGCSPALELKERHNMRRKLMSSEAKSSRKRKLQEPSAVVVLEDLGAEYLEALLSNSI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0184 199 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Aed4g0184 199 PANTHER DNA-BINDING DOMAIN 50 197 IPR044808 GO:0003700|GO:0009873
Aed4g0184 199 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Aed4g0184 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 50 197 - -
Aed4g0184 199 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Aed4g0184 199 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Aed4g0184 199 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
Aed4g0184 199 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Aed4g0184 199 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Aed4g0184 199 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0184 Aed-Chr4 1339256 1339855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0184 58 198 AP2-EREBP Transcription Factor Family AT3G23240 60.000 1.95e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed4g0184 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0184 K14516 - gmx:100800600 276.559