Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0183 ATGGCACAAACTGATTCAGATTCTGCTTCTCCTTTACCAATACTTGCCATCATTGTGCCAAGCATTTTTGTCACTGCTTTCATTCTCATCACCTACTTAACTCTTGTGACCAAATGCTGCTCAAACTGGCACCAACTTAACCCATTGAGATCACAGCATGAAGACCATTACCAAGACCCCTTCATAGCACTCTCTCTTTCTCCCACGATGTGGAACCGTGGACTCGATGAATCCGCTATCCAAGAAATCCCAACACTTGAATACACAAAAGAAGAAGCTGATGATGACCATGAGAAGAATCAAAGTAAGTGTGGCTGCGTGGTTTGTTTGACTGAGTTTCAAGAACATGATATGCTAAAGGTTCTGCCAAATTGCAGCCACGCCTTTCACTTGCATTGCATTGAAATTTGGCTTCAAACCAATGCCAACTGCCCTCTTTGCAGATCAAGCATTGTTGTCTCAGGTAACACACACTTACCATTTCCAATGGATCATGTCATTAATGCTCCAAGCTCTTCTCCTCAGGATTCTCAATTGCTCTCTTACATGGGAAGTGATGAGGATTTTGTGGTCATTGAACTTGGAGCAACAACATTGCCTCAGATGATGCAGCAAGAAAGAATAGTAGAGAGTAGAAGTAATAGTTACTCTACAAGGAAGTGTAACCGTGTTTCCATCATGGGAGATGAGTGCATTGATGTTAGGAAGAAAGATGAACAGTTTTCTATTCAGCCTATTCGAAGATCTTTCTCGATGGATTTAGCTAATGATAGGCAAGTTTACTTGGATTTTCAAACCATGATGATACAACAGAATGAATAA 822 0.41 MAQTDSDSASPLPILAIIVPSIFVTAFILITYLTLVTKCCSNWHQLNPLRSQHEDHYQDPFIALSLSPTMWNRGLDESAIQEIPTLEYTKEEADDDHEKNQSKCGCVVCLTEFQEHDMLKVLPNCSHAFHLHCIEIWLQTNANCPLCRSSIVVSGNTHLPFPMDHVINAPSSSPQDSQLLSYMGSDEDFVVIELGATTLPQMMQQERIVESRSNSYSTRKCNRVSIMGDECIDVRKKDEQFSIQPIRRSFSMDLANDRQVYLDFQTMMIQQNE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0183 273 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Aed4g0183 273 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 272 - -
Aed4g0183 273 CDD RING-H2_PA-TM-RING 106 148 - -
Aed4g0183 273 SUPERFAMILY RING/U-box 79 154 - -
Aed4g0183 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Aed4g0183 273 SMART ring_2 106 147 IPR001841 -
Aed4g0183 273 PANTHER RING-H2 FINGER PROTEIN ATL16 5 272 IPR044600 GO:0016567|GO:0016740
Aed4g0183 273 Pfam Ring finger domain 106 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0183 Aed-Chr4 1331854 1332675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0183 6 273 C3H Transcription Factor Family AT1G04360 41.042 1.53e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0183 K19041 - gmx:100809883 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0183 4 1331854 1332675 Aed4g0183 4 1331854 1332675 ECH
Aed4g0183 4 1331854 1332675 Aed8g0204 8 1732462 1734846 PCT
Aed8g0913 8 7867258 7868504 Aed4g0183 4 1331854 1332675 PCT