Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0182 ATGGAGGACAAGGTGAATGAAGTGGAAGCAAAGGAAATAAAGTATAGAGGAGTACGTAGAAGGCCATGGGGAAAATTTGCTGCAGAGATTAGAGATTCAGCTAGACATGGCGCACGTGTGTGGCTAGGGACATTTAACACTGCTGAAGAGGCTGCAAGGACTTATGATCGTGCTGCCTTTGAGATGAGAGGTGCTATGGCCATTCTAAACTTCCCAAATGAACACCCTCCTTATTGCAATGTTAGCAAGAAGTCCTCATCATCTACCACTGAGCTTGGTAAACAAGTTGTGGTGTTTGAGTGCTTGGATGACAAATTGCTAGAGGAACTCCTTGATTTTGATGGAAAAACCATCAATGGAGACTTGGGTATGTAG 375 0.44 MEDKVNEVEAKEIKYRGVRRRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARTYDRAAFEMRGAMAILNFPNEHPPYCNVSKKSSSSTTELGKQVVVFECLDDKLLEELLDFDGKTINGDLGM 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0182 124 PANTHER DNA-BINDING DOMAIN 7 84 IPR044808 GO:0003700|GO:0009873
Aed4g0182 124 Gene3D AP2/ERF domain 13 73 IPR036955 GO:0003700|GO:0006355
Aed4g0182 124 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Aed4g0182 124 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Aed4g0182 124 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
Aed4g0182 124 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Aed4g0182 124 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 7 84 - -
Aed4g0182 124 Pfam AP2 domain 14 64 IPR001471 GO:0003700|GO:0006355
Aed4g0182 124 ProSiteProfiles AP2/ERF domain profile. 14 72 IPR001471 GO:0003700|GO:0006355
Aed4g0182 124 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0182 Aed-Chr4 1328881 1329255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0182 11 112 AP2-EREBP Transcription Factor Family AT3G23230 55.200 8.80e-41 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed4g0182 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0182 - - gmx:100800069 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0182 4 1328881 1329255 Aed4g0182 4 1328881 1329255 ECH
Aed8g0915 8 7879695 7880132 Aed4g0182 4 1328881 1329255 PCT