Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0181 ATGGAATTTAATTCTTCTCTATTTCCATACCAAAGTGTAGAATCGCATTTCAATTCATGGGAAGAGTTGTTTTCGTTCAACAATAACCTTCCCTTGAATAATGCAGAGAATGAATCGTCCTTGGACTCCAACAAATCTTCATCCTCCATTAATGAAGGAATAACGGAGTCCCAAGAAATGACTTCCAATAATGTTACATGCCACAGCCGCGTTGAAGAAAAATATTCATCACCATCATCACCACCATCATGTTCATCTAAGAGGCCCTACAGAGGAGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATAAGAGACACGACAAGAAATGGGGTTAGAGTGTGGATTGGAACATTTGAGACTGCTGAAGCAGCTGCTTTGGCTTATGACCAAGCAGCTTTCTTGACGAGGGGTGTTCTGGCTACCCTTAACTTTTCAGTGCAAGTGGTGATGGAGTCCCTTCAAAACATGCGTTTTAAGGCATTGAAAAACGATATCTCACCCTTGTTGACACTCAAAAGGATGCACAGCAGGATCAGTAGTAGTAGTAGTAGTAAAAAGGTCAAAAGGGTTTGCAGCAGCAACGGCAAATTGGACAATACTAATTATAGTACTCAAAATGTGTTGGTGTTGGAGGATTTGGGTCCTGAATACCTAGATCAACTTTTGAGCTTCACTTGCCCTGGTTCTTGGTGCTGA 702 0.4174 MEFNSSLFPYQSVESHFNSWEELFSFNNNLPLNNAENESSLDSNKSSSSINEGITESQEMTSNNVTCHSRVEEKYSSPSSPPSCSSKRPYRGVRRRPWGKFAAEIRDTTRNGVRVWIGTFETAEAAALAYDQAAFLTRGVLATLNFSVQVVMESLQNMRFKALKNDISPLLTLKRMHSRISSSSSSKKVKRVCSSNGKLDNTNYSTQNVLVLEDLGPEYLDQLLSFTCPGSWC 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0181 233 Pfam AP2 domain 90 135 IPR001471 GO:0003700|GO:0006355
Aed4g0181 233 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Aed4g0181 233 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Aed4g0181 233 SMART rav1_2 89 153 IPR001471 GO:0003700|GO:0006355
Aed4g0181 233 PANTHER DNA-BINDING DOMAIN 3 227 IPR044808 GO:0003700|GO:0009873
Aed4g0181 233 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 227 - -
Aed4g0181 233 MobiDBLite consensus disorder prediction 36 86 - -
Aed4g0181 233 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Aed4g0181 233 MobiDBLite consensus disorder prediction 36 92 - -
Aed4g0181 233 ProSiteProfiles AP2/ERF domain profile. 89 147 IPR001471 GO:0003700|GO:0006355
Aed4g0181 233 CDD AP2 90 146 IPR001471 GO:0003700|GO:0006355
Aed4g0181 233 SUPERFAMILY DNA-binding domain 90 148 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0181 Aed-Chr4 1324202 1324903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0181 83 232 AP2-EREBP Transcription Factor Family AT3G23240 52.318 7.16e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed4g0181 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0181 K14516 - gmx:100818907 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0181 4 1324202 1324903 Aed4g0181 4 1324202 1324903 ECH
Aed4g0181 4 1324202 1324903 Aed8g0201 8 1720968 1721579 PCT
Aed8g0916 8 7885450 7887643 Aed4g0181 4 1324202 1324903 PCT