Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0180 ATGGAGCCTTCGGATATTTTGTTTGAATCATTTTCAAGCAAAGGTACTAATGAATACTGGGATCCTTTCCATGATTCTCTTTCCTTTGATATGATTGATGACTTAAGGGATCCACAGGAACCTGCAACAAGCCAAGTAGTGAGTGAAGAAACTAAGAAGAAGTGTTATATTGGAGTAAGGAGAAGACCATGGGGAAGATTTGCAGCAGAAATCAGAGACACAACGAGGAAAGGTGCGAGGGTTTGGCTTGGAACGTTTGAGAGTGAAGAAGAAGCTGCTTTGGCTTATGACCAGGCTGCATTTACCATGAGAGGCTCAAGTGCAGTGCTGAATTTTCCAGTCAAAAGGGTAACAGAGTCTTTGCAAGAGATCAATTATTTTGGTTGCGGCAGCAAAGGGTTCTCTCCTGCGTTGGAACTCAAAGAGAGGCACAACGTAAGACGAAAGTTAATGTCATCAGAGGCTAAGAATAGTAGGAAGAGGAAACTGCAGGAATCGAGTGCTGCTGTGGTGTTGGAGGATTTGGGAACTGAATACCTGGAAGCACTTCTTAGCAATAGCATATAG 567 0.4321 MEPSDILFESFSSKGTNEYWDPFHDSLSFDMIDDLRDPQEPATSQVVSEETKKKCYIGVRRRPWGRFAAEIRDTTRKGARVWLGTFESEEEAALAYDQAAFTMRGSSAVLNFPVKRVTESLQEINYFGCGSKGFSPALELKERHNVRRKLMSSEAKNSRKRKLQESSAAVVLEDLGTEYLEALLSNSI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0180 188 ProSiteProfiles AP2/ERF domain profile. 55 113 IPR001471 GO:0003700|GO:0006355
Aed4g0180 188 PANTHER DNA-BINDING DOMAIN 26 186 IPR044808 GO:0003700|GO:0009873
Aed4g0180 188 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
Aed4g0180 188 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Aed4g0180 188 PANTHER AP2 DOMAIN CONTAINING PROTEIN, EXPRESSED 26 186 - -
Aed4g0180 188 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Aed4g0180 188 SMART rav1_2 55 119 IPR001471 GO:0003700|GO:0006355
Aed4g0180 188 PRINTS Ethylene responsive element binding protein signature 95 115 IPR001471 GO:0003700|GO:0006355
Aed4g0180 188 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Aed4g0180 188 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0180 Aed-Chr4 1318044 1318610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0180 47 187 AP2-EREBP Transcription Factor Family AT3G23240 58.621 5.53e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed4g0180 AP2 3.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0180 K14516 - gmx:100800600 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0180 4 1318044 1318610 Aed4g0180 4 1318044 1318610 ECH
Aed4g0180 4 1318044 1318610 Aed8g0918 8 7901350 7902027 PCT