Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0178 ATGGATTTTGACTTCGATTCTACTTTTTTCCTAAACCAAAACCTTAACTTCTCAGAAAACTCCTCTGTTTGTGGAGACCTTTCTTCCTGGGACTACAGCTTTGTTTTGGATGACATCTTTAACTTCAGTGACAATTCGTCACAGTCACAAACCAAGGAATCATCTTCGGCATCCAACGTGTCGGGTTCTGTTGGCAGTGTTGAGTTACAAGAAGTCTCATCTAACACTACTTACAAAGAAGTAGTGAAAAAAGCACAACAATTATCATCGTCGTCGTCGCCATCTTCGCAACCAGCGAAGGAGCCTAGGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGAAAGTTCGCAGCGGAAATAAGAGACTCCACTCGAAACGGCGTTCGAGTGTGGATTGGAACGTTTGACACAGCGGAAGCCGCGGCTCTGGCTTATGACCAAGCAGCGTTCTCCACAAGAGGGTCTCTGGCGGTGCTGAATTTCCCAGAGGAAGTGGTGAGGGAGTCCCTCAGAGACATGCCAACGAGTAAGCCATGGGAAGAAGGCTCATCCCCTGTTTTGGCTCTCAAGAGAAAACACACTATGAGAAGAAAGTCCAATTCTAAGAAGAAGACCAAAACCGATCACACTCACAGGGAACAATTAGAGTTCACCACCACTTCGCAAAATGTGTTGGTGTTCGAGGATTTGGGTGCTGAGTACCTAGAACAGCTCTTGAGTTTGACTTCTTAG 732 0.4672 MDFDFDSTFFLNQNLNFSENSSVCGDLSSWDYSFVLDDIFNFSDNSSQSQTKESSSASNVSGSVGSVELQEVSSNTTYKEVVKKAQQLSSSSSPSSQPAKEPRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLRDMPTSKPWEEGSSPVLALKRKHTMRRKSNSKKKTKTDHTHREQLEFTTTSQNVLVFEDLGAEYLEQLLSLTS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0178 243 Gene3D AP2/ERF domain 104 164 IPR036955 GO:0003700|GO:0006355
Aed4g0178 243 MobiDBLite consensus disorder prediction 84 99 - -
Aed4g0178 243 SUPERFAMILY DNA-binding domain 104 163 IPR016177 GO:0003677
Aed4g0178 243 SMART rav1_2 104 168 IPR001471 GO:0003700|GO:0006355
Aed4g0178 243 MobiDBLite consensus disorder prediction 84 108 - -
Aed4g0178 243 ProSiteProfiles AP2/ERF domain profile. 104 162 IPR001471 GO:0003700|GO:0006355
Aed4g0178 243 PANTHER DNA-BINDING DOMAIN 19 240 IPR044808 GO:0003700|GO:0009873
Aed4g0178 243 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 240 - -
Aed4g0178 243 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Aed4g0178 243 MobiDBLite consensus disorder prediction 193 213 - -
Aed4g0178 243 CDD AP2 105 163 IPR001471 GO:0003700|GO:0006355
Aed4g0178 243 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Aed4g0178 243 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0178 Aed-Chr4 1298750 1299481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0178 69 239 AP2-EREBP Transcription Factor Family AT3G23240 54.971 2.48e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed4g0178 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0178 K14516 - gmx:100779524 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0178 4 1298750 1299481 Aed4g0178 4 1298750 1299481 ECH
Aed4g0178 4 1298750 1299481 Aed8g0922 8 7949378 7951081 PCT