Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0165 ATGCATATAGCAGGTCAAATAAATGCAACTTCAGTGAAATGTCTTGTCAACAGCATTTCTCGATTCATACATCTAGTTTCTTGCCAAGCAGTAAAACCTATGTCCCTTCAGAAGAACTGTAATAATATGGTTGGTGTGTTGAAGCGTTTGAAACCAGTGCTTGATGATATTGTGGATTTCAAAATACCTTTGGATGAAAACCTGCATAGAGAATGTGAAGAATTGGATATGCAGGTTCTTAAAAGTGGGGAATTGTTGATCAAGTTACAGAACTCTTCATATAAGATTTGTCACATGATAGTCAAATCCCCAAAGGCACCTGCATCTGTTTCAGTTTTGGGTAATCTTCAGCACTATATGCAGGAACTTCAGTGTCTTAAGAAGGAACCTACAATGGTCTATATAGAAGAAGCACTGAGAAATCAAAGGGATAATATTGAACCTTGCTATGGTCCTCTAAAGGAAATTATAGGGCTACTCAAATTGACATCAAACCAGGAGCTCCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTCAAATGCTGAAGTCAATAACACAAAAGGGGACTTGAATGAAATTAACCAAATTGTGAATCTTGTGTGCAATTTGCGTGATTATGTGATGAAATTTGAGCGCCCTGAAGTCAAAAGTGGTGTTTCAATTCCCCCATATTTTCGATGCCCTTTGTCATTGGAACTCATGTCAGATCCTGTCATTGTGGCTTCAGGTCAGACATATGAAAGGCAATCCATTCAAAAGTGGCTTGATCATGGGCTAACTGTTTGTCCCAACACTCATCAGAGACTCGTCCATACAAATCTCATTCCCAATTATACTGTTAAAGCTATGATAGCAAATTGGTGTGAGGATAATAATGTCAAACTTCCCAGTAACTCTAAGCAAAGTAATTCCGTGCATATTTCATCTCCCTCAGATAATTTATTACATCAAGATTTAGATCATCTGTGTAGCTTTGAGTCTTCAGATAGTAGCAATTCCAATTCAAATCAAACGGCAAATGCATTTGAGAAGCAAAAGGATGATAACTCTTTCAAATCAAGCAGGGAATCCGATAGAAGCCAGAATGGAGAGACAGAAAAGTTAGAGCAACAATCCCCTGCACCTTCATGTAGTAACAGCAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACTTCCAGTTTCGAAAGAGGTGTCAAGCATATCTAATAAGCATCAAAATGTGGAGTTGTCTGGAGAAATTACAAATGGGTGTCCTGCTTCTCCTGCATATAAAGAATCAGGGGTTTATCCTTGGTTATCTGGAAAGCAATTTCATAGCCCTGGATTGATAATTGGAAGGAAGGAGGATGAAAATAAGTGTGATGAGAGTAGCAACAATACTATTACTAGTCATTCAAAAGTTGCTTCCCATCCTGTCTCCAACTTAGGATCTGATGAATTGATCACCACATCCCATGTCAATGAATTGATTGAAGACCTCCAGAGTCAATCAAATGATACACAAACTGCTGCTGCAGAACAATTGAGGCTCTGTACCAAGCATAACATGGAGAACCGCATCATTGTAGGGCGGTGTGGGGCAATTATGCATTTACTTTCACTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTCTACTGAATTTGTCAATTAATGAAGGCAACAAGGCCTTGATTATGGAAGCAGGGGCCATAGAACCACTTATCCATGTTTTACAGACAGGGAATGATGGTGCAAAGGAGAATTCTGCTGCTGCTCTGTTCAGCCTCTCAGTTATAGATAACAATAAGGCAAAAATTGGCCGTTCTGGTGCAGTTAAGGCTTTGGTGGGTCTTCTATCCTCAGGAACTCTTAGGGGAAAGAAGGATGCTGCTACTGCTTTATTCAACCTATCAATATTCCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCAGTGAAGTTTCTGGTTCTGCTATTGGACCCTACTGATAAAATGGTTGACAAGGCTGTTGCACTTTTGGCAAATCTGTCGACAATTGCAGAGGGACGAATAGAAATTGCAAGGGAAGGGGGCATTCCATTACTAGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATCATCTTGCAACTATGTCTTCATAGTCGAAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAGTCCGGTACTCCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGTCACTTTCGTAATCAGCGCGAAGGAGCCACAGGGAAGGGGAAATCATGA 2334 0.4015 MHIAGQINATSVKCLVNSISRFIHLVSCQAVKPMSLQKNCNNMVGVLKRLKPVLDDIVDFKIPLDENLHRECEELDMQVLKSGELLIKLQNSSYKICHMIVKSPKAPASVSVLGNLQHYMQELQCLKKEPTMVYIEEALRNQRDNIEPCYGPLKEIIGLLKLTSNQELLKESIAVEKERSNAEVNNTKGDLNEINQIVNLVCNLRDYVMKFERPEVKSGVSIPPYFRCPLSLELMSDPVIVASGQTYERQSIQKWLDHGLTVCPNTHQRLVHTNLIPNYTVKAMIANWCEDNNVKLPSNSKQSNSVHISSPSDNLLHQDLDHLCSFESSDSSNSNSNQTANAFEKQKDDNSFKSSRESDRSQNGETEKLEQQSPAPSCSNSRSESFSSSISSTDYVLPVSKEVSSISNKHQNVELSGEITNGCPASPAYKESGVYPWLSGKQFHSPGLIIGRKEDENKCDESSNNTITSHSKVASHPVSNLGSDELITTSHVNELIEDLQSQSNDTQTAAAEQLRLCTKHNMENRIIVGRCGAIMHLLSLLYSDMKITQEHAVTALLNLSINEGNKALIMEAGAIEPLIHVLQTGNDGAKENSAAALFSLSVIDNNKAKIGRSGAVKALVGLLSSGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPTDKMVDKAVALLANLSTIAEGRIEIAREGGIPLLVEIVESGSQRGKENAASIILQLCLHSRKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATGKGKS 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0165 777 SMART Ubox_2 225 288 IPR003613 GO:0004842|GO:0016567
Aed4g0165 777 MobiDBLite consensus disorder prediction 367 391 - -
Aed4g0165 777 CDD RING-Ubox_PUB 226 268 IPR045210 -
Aed4g0165 777 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 78 772 - -
Aed4g0165 777 MobiDBLite consensus disorder prediction 326 391 - -
Aed4g0165 777 Pfam Armadillo/beta-catenin-like repeat 562 601 IPR000225 GO:0005515
Aed4g0165 777 Pfam Armadillo/beta-catenin-like repeat 605 642 IPR000225 GO:0005515
Aed4g0165 777 Pfam Armadillo/beta-catenin-like repeat 523 560 IPR000225 GO:0005515
Aed4g0165 777 PANTHER U BOX DOMAIN-CONTAINING 78 772 - -
Aed4g0165 777 PANTHER U BOX DOMAIN-CONTAINING 12 79 - -
Aed4g0165 777 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 573 615 IPR000225 GO:0005515
Aed4g0165 777 MobiDBLite consensus disorder prediction 346 366 - -
Aed4g0165 777 Gene3D - 468 628 IPR011989 -
Aed4g0165 777 SUPERFAMILY RING/U-box 220 296 - -
Aed4g0165 777 SMART arm_5 644 683 IPR000225 GO:0005515
Aed4g0165 777 SMART arm_5 521 561 IPR000225 GO:0005515
Aed4g0165 777 SMART arm_5 603 643 IPR000225 GO:0005515
Aed4g0165 777 SMART arm_5 562 602 IPR000225 GO:0005515
Aed4g0165 777 SMART arm_5 684 724 IPR000225 GO:0005515
Aed4g0165 777 ProSiteProfiles U-box domain profile. 221 295 IPR003613 GO:0004842|GO:0016567
Aed4g0165 777 MobiDBLite consensus disorder prediction 462 480 - -
Aed4g0165 777 MobiDBLite consensus disorder prediction 456 480 - -
Aed4g0165 777 MobiDBLite consensus disorder prediction 326 345 - -
Aed4g0165 777 Pfam U-box domain 222 292 IPR003613 GO:0004842|GO:0016567
Aed4g0165 777 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 655 696 IPR000225 GO:0005515
Aed4g0165 777 Gene3D - 631 773 IPR011989 -
Aed4g0165 777 SUPERFAMILY ARM repeat 485 764 IPR016024 -
Aed4g0165 777 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 614 656 IPR000225 GO:0005515
Aed4g0165 777 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 12 79 - -
Aed4g0165 777 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 532 574 IPR000225 GO:0005515
Aed4g0165 777 Coils Coil 165 185 - -
Aed4g0165 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 296 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0165 Aed-Chr4 1227082 1232064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0165 12 777 U-box Gene Family AT3G54790 51.633 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0165 - - gmx:100804684 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0165 4 1227082 1232064 Aed4g0165 4 1227082 1232064 ECH