Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0162 ATGGTAGTGATTTTGATTATGGAAGCTGATTATGGAAAGGATTGCACCAAATTTGAGAAGAGAGAAAATCTTCCCATTCCTCCTGGTTTTACATCTCTGACATCTTTCATTTTGAAAAGGGGTGGAAATGTTCAGAGAAGTGATAAATCTACAACCTTTCGAATTGCATCTGAACAAGAGCCAATCTTCACAGAGACTATACATGAGATGAATGACATTAGTGCTTATAGACAGGTTCTTATGCATAGGCCATGGATAATCTCAGACCAGAGCAACCATCACAAACCTGAGGAATCTCACACAAAGCATCTTCCTACGGATCCCCCTTTAAATGCTGGCCGTCCAAAAGGGATCATACATGGATGTCCAAACTGCAGTAATTGTCTGAACGTAACAGCAAGGTGGCATCCAGAGGATGCTATAAGAGACGTTTTGGAAGAGGCTCCTATTTTCCACCCAACAGAAGAGGAATTCAAAGACGCACTTAAATATATTGCAAGCATACGTTCCAGAGCAGAACCTTTTGGAATTTGCCGTATTGTCCCTCCTACTTGCTGGAAACCACCATGCTTTCTTGAGAAAAAGAACATATGGGAAATGTCTGAATTTGTTGCTCAGAGTCAGCGAATTGATGGACACCAAGTTCAGCCTGCACAAGAAATTATGTCCAGTGCTCATGGAAATACAAAAACCAAGAGAAAAAGAGATGTAAAAGTAACTTTAGACTCTCAGCTTAGTAATAGAAACACCAGCATTCCAAATAACCAGAACGTTGAAAAATGTGATTGTGAGTCTGAACCTGGTCTTAAATTCAGTCTCAAAACATTCAAGAAATATGCAGACATATTTAAGAGCCAGTACTTCGATTACAAGGATAAGAAGAAGATTATAGGTTCCAATATAAAATTAGCTATACATCAGCAGTGGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGACGGATTGTTCAGAATCCAACTGAAGAAATCAAGGTGCTTTGTGGTAACACTTTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCAACAGTTTCTGATCCTGTGGAGGCAGACACTTACCCTGAATATTTGAAATCTGGGTGGAACTTGAATAATATACTCTCACTGTCAGGTTCCCTTCTTTCTTTTGAAAGCTCTGAAGCTTCACATAATTTTGCCCCCAAGATTCATGTGGGAATGTGCTTCTCTCCACTCAACTGGAAAGTTGAAGAGCACCACTTATACTCATTATCTTATGTGCATTTGGGTGAACCAAAAGTGTGGTATGGAGTCCCAGGAAGATTTGCTGTTAACTTTGAAACAATTTGGAAAAAGTATCTCCCAGATTTGTATACTGGACAGCCTGATATGCATGATAATATGGTGATGCAGCTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTATATCGTTGTGTTCAGTATCCTCGTGAGTTTGTTCTTGTCTTCCCTGGGGCATATCATTCAGGATTTGATTGTGGCTTCAACTGTTCTGAAGCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCACGGACAGAATGTTGTAGAACTATATTGTGAACAGAGGAGAAAGACATTACTTTCATATGATAAGCTTTTGCTAGGAACAGCAAGGGAAGCTGTGAGGGCCCAATGGGAAACTAATCTGTGCAGGAAGAGCACATCATTAGACAGCTTAACATATGAAGATGCCTATAAAAAAAATGCGTTCTTAACAAAAGCTTTGAACTCTCGCATCCAGAGTGAAAGTTTGAAGAGGAAATTTCTTTGCACTTCTTTGGCATCACAAAGAATGGATGAAAATTTTGATGCCACTTGTAAAAGGGAATGTAGTATTTGCCTGCGTGATTTACACTTGTCTGCTGTAGGGTGTTCATGTTCAGATGACAAGTTTGCATGTCTTGATCATGCAAAACAGCTTTGTTCTTGCACTTGGAGCAACAAAACCCTCTTCTACCGTTATGAAATCAGTAATTTGAATGTTCTTTGTCAAGCTTTGGATGGGAAATTAAGTGCAGTCTTTAAATGGGCCAAGGAGGATCTCGGATTAAGTCTGAACTCTGTTGCCTCCAGGAGATCAAAACAAAGCCCAGAAAACCTAAGTGGTTCTATCCACCCTTCGCTAGACTTGCAGATGAAAGAACCTGTATCTGGGACAGTGTCGGATGAATCCTCAAAGGGGAAACGACGTCAATTGCAGGATATATGGAAGTCATCAAAAAGGAAACAAAATGAAGTGGTTCCGAATTCATCAAAGAAGAAAAAAAATGAGGTGGTTCCGGATTCACCAAAGAAACAAAATGCAGTACTTCACTCAACTGCAGCAGATGATACGAAAGGATTCAATTCTGTTGGCACCAAAATTGATACGAAGACACTTGGGCGTAAGTTTACAATTTCAAAGAAAGTAAGAGATCCAAAAGTAAAAGTATCTGAAGTTACAGACTCACGTTAA 2481 0.3994 MVVILIMEADYGKDCTKFEKRENLPIPPGFTSLTSFILKRGGNVQRSDKSTTFRIASEQEPIFTETIHEMNDISAYRQVLMHRPWIISDQSNHHKPEESHTKHLPTDPPLNAGRPKGIIHGCPNCSNCLNVTARWHPEDAIRDVLEEAPIFHPTEEEFKDALKYIASIRSRAEPFGICRIVPPTCWKPPCFLEKKNIWEMSEFVAQSQRIDGHQVQPAQEIMSSAHGNTKTKRKRDVKVTLDSQLSNRNTSIPNNQNVEKCDCESEPGLKFSLKTFKKYADIFKSQYFDYKDKKKIIGSNIKLAIHQQWEPSVENIEGEYGRIVQNPTEEIKVLCGNTLEAGVFSSGFPTVSDPVEADTYPEYLKSGWNLNNILSLSGSLLSFESSEASHNFAPKIHVGMCFSPLNWKVEEHHLYSLSYVHLGEPKVWYGVPGRFAVNFETIWKKYLPDLYTGQPDMHDNMVMQLSCSILKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSEAVSFAPLEWLLHGQNVVELYCEQRRKTLLSYDKLLLGTAREAVRAQWETNLCRKSTSLDSLTYEDAYKKNAFLTKALNSRIQSESLKRKFLCTSLASQRMDENFDATCKRECSICLRDLHLSAVGCSCSDDKFACLDHAKQLCSCTWSNKTLFYRYEISNLNVLCQALDGKLSAVFKWAKEDLGLSLNSVASRRSKQSPENLSGSIHPSLDLQMKEPVSGTVSDESSKGKRRQLQDIWKSSKRKQNEVVPNSSKKKKNEVVPDSPKKQNAVLHSTAADDTKGFNSVGTKIDTKTLGRKFTISKKVRDPKVKVSEVTDSR 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0162 826 MobiDBLite consensus disorder prediction 775 793 - -
Aed4g0162 826 Pfam C5HC2 zinc finger 619 669 IPR004198 -
Aed4g0162 826 MobiDBLite consensus disorder prediction 732 770 - -
Aed4g0162 826 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 86 781 - -
Aed4g0162 826 ProSiteProfiles JmjC domain profile. 362 528 IPR003347 -
Aed4g0162 826 MobiDBLite consensus disorder prediction 701 715 - -
Aed4g0162 826 Pfam jmjN domain 149 182 IPR003349 -
Aed4g0162 826 SUPERFAMILY Clavaminate synthase-like 359 554 - -
Aed4g0162 826 MobiDBLite consensus disorder prediction 701 793 - -
Aed4g0162 826 SMART JmjN_1 147 188 IPR003349 -
Aed4g0162 826 SMART cupin_9 362 528 IPR003347 -
Aed4g0162 826 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Aed4g0162 826 PANTHER LYSINE-SPECIFIC DEMETHYLASE 86 781 - -
Aed4g0162 826 Gene3D Cupin 133 512 - -
Aed4g0162 826 Pfam JmjC domain, hydroxylase 397 511 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0162 Aed-Chr4 1193980 1199095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0162 7 714 JUMONJI Transcription Factor Family AT1G08620 45.781 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aed4g0162 JmjC 7.1e-32 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0162 - - gmx:100804864 1444.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0162 4 1193980 1199095 Aed4g0162 4 1193980 1199095 ECH