Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0161 ATGGGTCTGAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGATGTTCTGAAGGGTACCTTGGTCGAAATTGACCTCCATATATGCGAACCTTGGCAACTTCCTGGGGTTACATCATGTTCACAAAAAGTCCTTTTTCTGCTTATAAAAAACCTGTGTCTTGTTCATATATATGTTGAGGCTGTGTTCGAGGACTGGGTTTTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATGACAACAATAGTTCCAAAGCATCCCTAACATTGGATTCGTTATCTCCCACGACCAACCAAGCCATGCCTGCTGCTGCTGCTGGGTATAACCGATTTGGCTCTTTCTCTTCCTCCAATAATATTAATATGCCAACCCTGCACTTCAACTACCCAACCCAAAACAACGCTTCTTTGATGGATCTCCTTCACTTCTCTCGGGAAACCAACCCCAACAACAACAATAACAGCACCGTTCTTACTCAAATTAGTGCCAAAGGTGATGACGGATCCTACGGTTTCTTATGGGACATGGATCTAGATGATGGCGTGGCTTCAAACTTGGACGCGATAAGATTCGAGGTTGATAATAATAATAATATGATGTTGCTATAA 669 0.4305 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEDVLKGTLVEIDLHICEPWQLPGVTSCSQKVLFLLIKNLCLVHIYVEAVFEDWVLCRVFHKSKEDDNNSSKASLTLDSLSPTTNQAMPAAAAGYNRFGSFSSSNNINMPTLHFNYPTQNNASLMDLLHFSRETNPNNNNNSTVLTQISAKGDDGSYGFLWDMDLDDGVASNLDAIRFEVDNNNNMMLL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0161 222 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 62 - -
Aed4g0161 222 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 83 216 - -
Aed4g0161 222 Gene3D NAC domain 19 73 IPR036093 GO:0003677|GO:0006355
Aed4g0161 222 ProSiteProfiles NAC domain profile. 10 184 IPR003441 GO:0003677|GO:0006355
Aed4g0161 222 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 62 - -
Aed4g0161 222 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 83 216 - -
Aed4g0161 222 SUPERFAMILY NAC domain 8 95 IPR036093 GO:0003677|GO:0006355
Aed4g0161 222 Pfam No apical meristem (NAM) protein 11 68 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0161 Aed-Chr4 1174770 1180474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0161 1 98 NAC Transcription Factor Family AT4G28530 42.754 1.51e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed4g0161 NAM 8.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0161 - - gmx:100806284 159.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0161 4 1174770 1180474 Aed8g0936 8 8108611 8114278 PCT