Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0157 ATGGATTCTGCGAGGAGTTGGTTACAAAAATTTCAACCACGTGATAAATTGAGAGCCACTACAAGAAATAAAGATGTTCTAGACCAGAACAATGTTAATGGTGAAAACGAAGTTTCGAATGTGCCTATGGATGAAGCAGCTCTTTCCAATGTCACGAAACAAAAGGTTGCAGCAGCCAAACAATACATTGAGAACCACTACAAGGAACAAATGAAGAACCTTCAAGAGAGGAAGGAACGGTATTCGAAACATCTTGGAAAAAAGTTGGCAGACGCTGATGTCTCTGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAAGAAACAGAGTATATGCGTCTTCAAAGGCACAAAATGGGTGTTGATGATTTTGAGTTATTAACCATGATTGGAAAAGGTGCATTTGGAGAGGTCAGAGTTTGTAGGGAAAAGACTACAGATCATGTATTTGCAATGAAAAAGTTAAAGAAATCAGAAATGCTTCGTAGAGGGCAGGTAGAACATGTGAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGATGATGAGTATTTGTATCTTATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTACTCATGAGAAAGGATACCTTAACTGAAGATGAAGCTAGATTTTATGTGGGAGAAACAGTTCTAGCTATTGAATCTATACATAAACATAATTATATACATAGGGATATTAAGCCTGATAATTTATTACTGGATAGATATGGACACTTAAGACTATCAGATTTTGGACTATGTAAACCATTAGATTGTAGTACACTTGAAGAGTCAGATTTTTCTACAAGTCAAAATGCAAATGGATCTACACAAAATGATGATCAAGCAGCTCCAAAACGCACACAACAAGAACAATTGCAACATTGGCAAAAAAATAGAAGGACACTCGCGTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGAATGGAATGTGATTGGTGGTCACTTGGGGCTATTATGTATGAAATGCTGGTGGGATATCCACCTTTCTATTCTGATGATCCAATGTCAACATGCAGAAAGATAGTAAATTGGAAATCTCACTTAAAGTTTCCTGAAGAAGCAAGGTTAACTCCAGAGGCTAAAGATCTTACAAGTAAACTTTTGTGTAATGTTAACCAAAGGCTAGGCTCAAATGGTGCAAATGAAATAAAGGCTCATCCATTCTTCAACGGTGTTGAATGGGACAAATTGTATCAAATAGAAGCTGCATTTATTCCTGAAGTGAATGATGAATTAGATACTCAAAATTTTGAAAAGTTTGAAGAGGCTGACAGTCAAGCTCAATCATCATCAAGATCAGGTCCATGGAGGAAGATGCTTTCTTCGAAAGACATGAATTTTGTGGGATACACATACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATGACTGAATTAAGGAAGAAAACAACCAAAGCAAAGAAGCCATCTGTCAAGTCCTTATTTGATGGTGAGTGTGAAGCATCTGAAGCTTCAGAATCACCGGCAAGCATAACAGGGAATTCTGAAGATCTACCTCCTTTGTCGTATTAG 1623 0.3715 MDSARSWLQKFQPRDKLRATTRNKDVLDQNNVNGENEVSNVPMDEAALSNVTKQKVAAAKQYIENHYKEQMKNLQERKERYSKHLGKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTDHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEESDFSTSQNANGSTQNDDQAAPKRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLTPEAKDLTSKLLCNVNQRLGSNGANEIKAHPFFNGVEWDKLYQIEAAFIPEVNDELDTQNFEKFEEADSQAQSSSRSGPWRKMLSSKDMNFVGYTYKNFEIVNDYQVPGMTELRKKTTKAKKPSVKSLFDGECEASEASESPASITGNSEDLPPLSY 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0157 540 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Aed4g0157 540 SUPERFAMILY Protein kinase-like (PK-like) 99 471 IPR011009 -
Aed4g0157 540 SMART serkin_6 126 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0157 540 MobiDBLite consensus disorder prediction 1 22 - -
Aed4g0157 540 Pfam Protein kinase domain 127 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0157 540 ProSitePatterns Protein kinases ATP-binding region signature. 132 155 IPR017441 GO:0005524
Aed4g0157 540 MobiDBLite consensus disorder prediction 275 300 - -
Aed4g0157 540 Coils Coil 64 84 - -
Aed4g0157 540 CDD STKc_NDR_like 124 480 - -
Aed4g0157 540 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 521 - -
Aed4g0157 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 521 - -
Aed4g0157 540 Gene3D Phosphorylase Kinase; domain 1 97 201 - -
Aed4g0157 540 Gene3D Transferase(Phosphotransferase) domain 1 309 436 - -
Aed4g0157 540 Gene3D Transferase(Phosphotransferase) domain 1 202 275 - -
Aed4g0157 540 ProSiteProfiles Protein kinase domain profile. 126 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0157 540 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Aed4g0157 540 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Aed4g0157 540 MobiDBLite consensus disorder prediction 498 540 - -
Aed4g0157 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Aed4g0157 540 MobiDBLite consensus disorder prediction 522 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0157 Aed-Chr4 1136185 1140757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0157 1 512 AGC Kinase Gene Family AT2G20470 77.159 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Aed4g0157 Pkinase 4.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0157 K08790 - gmx:100783286 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0157 4 1136185 1140757 Aed4g0157 4 1136185 1140757 ECH
Aed4g0157 4 1136185 1140757 Aed8g0187 8 1616614 1622544 PCT
Aed8g0944 8 8217220 8227645 Aed4g0157 4 1136185 1140757 PCT